LOC122351258


Basic Information

Item Value
gene id LOC122351258
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2955344 ~ 2957198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU99473
CCCCTCTTTCTCGAAGACGAGGCGGCGGCAGCGGTCTTCTGCTCTCATGTCAATGGCAGAATTACAGCTCGCTATCATGACTTACCAAGACTGCGTATCAGTCTGGCTGCAGGACACAGGATAAGGGCGGCTTGCTCTCACTCGGGTCCTTGCATCACCCGAGAGCAGCAGCAAGGCgctcattaaatgaaaatgcatttaacatgCAGGAGGCGGCTGTTACCTGTCCATCAGGTACTGCATTAGCATACGGcAAAGCCAATATGAAGtgaaacttttgaatggcacGCAACGAAAATAGGACCACAAAGGATTGTAAGTTTTTCCACAGGCAAAACTATAAATCCAGATGGCATGCTGGATCAACCCGAGCTGATGAAAAATAACAGTGGAGGGccgaaaagggaaaaaaaatggtggCGATCGAATGAGAATTTCACACCTACAGTACCTACCACACATGGTCTTCACACATCGGATAGGGCTCGGAGAGAAAGCCCAGatgaacacaaatgtaaatgtatcgtTTATGACATTACAGTAACAATAACAGTAATGTTATTGTTTCATGCTTTTCACTGTAATATCTGGAGCTTCCCGtttcataataaacatttaacaatgCAAACAA
>TU99474
CCCCTCTTTCTCGAAGACGAGGCGGCGGCAGCGGTCTTCTGCTCTCATGTCAATGGCAGAATTACAGCTCGCTATCATGACTTACCAAGACTGCGTATCAGTCTGGCTGCAGGACACAGGATAAGGGCGGCTTGCTCTCACTCGGGTCCTTGCATCACCCGAGAGCAGCAGCAAGGCgctcattaaatgaaaatgcatttaacatgCAGGAGGCGGCTGTTACCTGTCCATCAGGTACTGCATTAGCATACGGcAAAGCCAATATGAAGtgaaacttttgaatggcacGCAACGAAAATAGGACCACAAAGGATTGTAAGGTATAGCACTTCAAACGGTCTTAAATGCACCTTTAGTGCAGATGGTTTAGCAACATGGACTAAAGTGAATGTCAAGACGTTAACGCAGTAAAGATGTGCAATGATGACCACAAATCTCTGAGGTCACGACCAGTGAAACTACATAATAGCATGTATTACCTGAGCACATGCTGTCTGTGCTGCTTCGTGTGCTTTAAGGTCTGAGGGCTCTATTTTTGATTCCTTCTCTACTGCCAGTTTTTCCACAGGCAAAACTATAAATCCAGATGGCATGCTGGATCAACCCGAGCTGATGAAAAATAACAGTGGAGGGccgaaaagggaaaaaaaatggtggCGATCGAATGAGAATTTCACACCTACAGTACCTACCACACATGGTCTTCACACATCGGATAGGGCTCGGAGAGAAAGCCCAGatgaacacaaatgtaaatgtatcgtTTATGACATTACAGTAACAATAACAGTAATGTTATTGTTTCATGCTTTTCACTGTAATATCTGGAGCTTCCCGtttcataataaacatttaacaatgCAAACAA
>XR_006251720.1
GAGAAGCAAGTGACGCATTTCCTGCCTCTTTTAAACCCCGGGAAACGGAGAGTTTCCCCCTCTTTCTCGAAGACGAGGCGGCGGCAGCGGTCTTCTGCTCTCATGTCAATGGCAGAATTACAGCTCGCTATCATGACTTACCAAGACTGCGTATCAGTCTGGCTGCAGGACACAGGATAAGGGCGGCTTGCTCTCACTCGGGTCCTTGCATCACCCGAGAGCAGCAGCAAGGCgctcattaaatgaaaatgcatttaacatgCAGGAGGCGGCTGTTACCTGTCCATCAGGTACTGCATTAGCATACGGcAAAGCCAATATGAAGtgaaacttttgaatggcacGCAACGAAAATAGGACCACAAAGGATTGTAAGTTTTTCCACAGGCAAAACTATAAATCCAGATGGCATGCTGGATCAACCCGAGCTGATGAAAAATAACAGTGGAGGGccgaaaagggaaaaaaaatggtggCGATCGAATGAGAATTTCACACCTACAGTACCTACCACACATGGTCTTCACACATCGGATAGGGCTCGGAGAGAAAGCCCAGatgaacacaaatgtaaatgtatcgtTTATGACATTACAGTAACAATAACAGTAATGTTATTGTTTCATGCTTTTCACTGTAATATCTGGAGCTTCCCGtttcataataaacatttaacaatgCAAACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99473 False 631 lncRNA 0.45 4 2955400 2957197
TU99474 True 868 lncRNA 0.44 3 2955400 2957197
XR_006251720.1 False 688 lncRNA 0.45 4 2955344 2957198

Neighbor

gene id symbol gene type direction distance location
vgll3 LOC107561316 coding upstream 24924 2926366 ~ 2930420 (+)
pou1f1 pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978 coding upstream 47211 2899163 ~ 2908133 (+)
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding upstream 456046 2494481 ~ 2499298 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding upstream 696729 2254557 ~ 2258615 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding upstream 753630 2145505 ~ 2201714 (+)
kctd4 kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 coding downstream 8848 2966046 ~ 2967965 (+)
tsc22d1 tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 coding downstream 21109 2978307 ~ 3016509 (+)
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding downstream 97164 3054362 ~ 3137945 (+)
epsti1 epsti1,LOC107549908 coding downstream 406536 3363734 ~ 3384177 (+)
vwa8 vwa8 coding downstream 550727 3507925 ~ 3584691 (+)
LOC122351269 NA non-coding upstream 30708 2917842 ~ 2924636 (+)
G67187 NA non-coding upstream 300868 2641619 ~ 2654476 (+)
G67097 NA non-coding upstream 822948 2131962 ~ 2132396 (+)
G67065 NA non-coding upstream 868539 2086282 ~ 2086805 (+)
LOC122351283 NA non-coding upstream 869166 2083592 ~ 2086178 (+)
G67296 NA non-coding downstream 95296 3052494 ~ 3053222 (+)
G67347 NA non-coding downstream 428432 3385630 ~ 3385950 (+)
G67348 NA non-coding downstream 429774 3386972 ~ 3387192 (+)
G67389 NA non-coding downstream 461889 3419087 ~ 3424421 (+)
G67396 NA non-coding downstream 479899 3437097 ~ 3441744 (+)
bpifcl bpi other upstream 1219024 1713812 ~ 1736320 (+)
G66795 NA other upstream 1820355 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2055965 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 2150335 797133 ~ 805009 (+)
G66657 NA other upstream 2493315 459574 ~ 462029 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 237575 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 305409 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 956440 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 990838 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 1024148 3981346 ~ 3985962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location