LOC122351419 (polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482)


Basic Information

Item Value
gene id LOC122351419
gene name polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3194773 ~ 3196618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU99551
CGCGCCGGCAGCGACAGGACTCAAACGTGGAGAGTAAACGGTCCGTTTTGATACTaatattttcctcttttttagCACGACATGGACGACGAGGAAGAGACATACAGACTATGGAAAATCAGGAAAACTATAATGCAGCTGTGTCACGATCGAGGTTATTTGGTGACGCAGGACGAACTGGATCAGACTCTCGATGAGTTCAGAAGCCAGTTTGGAGACAAACCCAGCGAAGGTCGACCGCGGCGCACGGATCTCACGGTCCTGGTCGCCCACAACGACGACCCGACCGACCAGATGTTTGTGTTCTTCCCTGAGGAGCCCAAAGTTGGCATCAAGACCATAAAGATGTATTGTCAGCGCATGCAAGAAGAAAACATCACCAGGGCCATCATTGTGGTCCAGATGGGCATGACGCCCTCCGCTAAACAGTCTCTGGTAGACATGGCGCCCAAGTACATACTTGAGCAGTTTCTTCAGCAGGAGCTTCTTATAAACATTACCGAACACGAGctTGTTCCAGAGCACATAGTCATGACTAAAGAGGAAGTGACCGA
>XM_043248480.1
GCGACGTCTGACGTCATAGACACGCGCCGGCAGCGACAGGACTCAAACGTGGAGAGTAAACGGTCCGTTTTGATACTaatattttcctcttttttagCACGACATGGACGACGAGGAAGAGACATACAGACTATGGAAAATCAGGAAAACTATAATGCAGCTGTGTCACGATCGAGGTTATTTGGTGACGCAGGACGAACTGGATCAGACTCTCGATGAGTTCAGAAGCCAGTTTGGAGACAAACCCAGCGAAGGTCGACCGCGGCGCACGGATCTCACGGTCCTGGTCGCCCACAACGACGACCCGACCGACCAGATGTTTGTGTTCTTCCCTGAGGAGCCCAAAGTTGGCATCAAGACCATAAAGATGTATTGTCAGCGCATGCAAGAAGAAAACATCACCAGGGCCATCATTGTGGTCCAGATGGGCATGACGCCCTCCGCTAAACAGTCTCTGGTAGACATGGCGCCCAAGTACATACTTGAGCAGTTTCTTCAGCAGGAGCTTCTTATAAACATTACCGAACACGAGctTGTTCCAGAGCACATAGTCATGACTAAAGAGGAAGTGACCGAGTTGTTGGCTCGGTAGTATCCTTTTGAGAAAttgatagaaatgtttttttttagtaacaaTGGTACCactacaattaatttttttcccttcaagttt

Function

symbol description
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99551 False 554 TUCP 0.50 5 3194795 3196521
XM_043248480.1 True 673 mRNA 0.47 5 3194773 3196618

Neighbor

gene id symbol gene type direction distance location
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding upstream 56828 3054362 ~ 3137945 (+)
tsc22d1 tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 coding upstream 178264 2978307 ~ 3016509 (+)
kctd4 kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 coding upstream 226808 2966046 ~ 2967965 (+)
vgll3 LOC107561316 coding upstream 264353 2926366 ~ 2930420 (+)
pou1f1 pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978 coding upstream 286640 2899163 ~ 2908133 (+)
epsti1 epsti1,LOC107549908 coding downstream 167116 3363734 ~ 3384177 (+)
vwa8 vwa8 coding downstream 311307 3507925 ~ 3584691 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding downstream 473944 3670562 ~ 3742739 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding downstream 547388 3744006 ~ 3752623 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding downstream 558198 3754816 ~ 3759215 (+)
G67296 NA non-coding upstream 141551 3052494 ~ 3053222 (+)
LOC122351258 NA non-coding upstream 237575 2955344 ~ 2957198 (+)
LOC122351269 NA non-coding upstream 270137 2917842 ~ 2924636 (+)
G67187 NA non-coding upstream 540297 2641619 ~ 2654476 (+)
G67097 NA non-coding upstream 1062377 2131962 ~ 2132396 (+)
G67347 NA non-coding downstream 189012 3385630 ~ 3385950 (+)
G67348 NA non-coding downstream 190354 3386972 ~ 3387192 (+)
G67389 NA non-coding downstream 222469 3419087 ~ 3424421 (+)
G67396 NA non-coding downstream 240479 3437097 ~ 3441744 (+)
LOC122351351 NA non-coding downstream 390185 3586803 ~ 3592240 (+)
bpifcl bpi other upstream 1458453 1713812 ~ 1736320 (+)
G66795 NA other upstream 2059784 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2295394 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 2389764 797133 ~ 805009 (+)
G66657 NA other upstream 2732744 459574 ~ 462029 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 65989 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 717020 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 751418 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 784728 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 923909 4120527 ~ 4127013 (+)

Expression


Co-expression Network