G67562 (LOC107588232,LOC107742953,LOC107671312,LOC107657349)


Basic Information

Item Value
gene id G67562
gene name LOC107588232,LOC107742953,LOC107671312,LOC107657349
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3946534 ~ 4031820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU99905
atatatatatatatatatatatatatatgtatatgtgtgtgtgtgtgtgtatatgcattcacgtaaatgtacatatttacgAAAAGGAGGGTAAATATGCAAAGGTATAAAAGCAAGGTAAATGCGTGGGCTTGGAATCAACGTATGAAGGGACGAAGGACGTGATGTCATACAGGAAGAGGCAGAGTCTGAGCGTTCAGCGGCGTGTCACTCGGCTGCGTCCCCGGCGGACACCGACACTAACTGCAGAGGGATCTCGGCGGTGCCCAGCTGGTCCTGTGAGCCGGACGTGTTGACGGTGGCGTTGACGGTGGCCAGGCCCTGCATGGAGCTGGGCTGGATGTTGGTGAGGATGAGCGTGGTGCCGCCCGTGGTGATGATGCTGTCTGAGGACACGGCTCCGCCCACACTGGCCACCACAGCTCCGCCCCCTCCCTTCTTGTTCTGATGGGTCTTTATGTGCTTGGCCAGGTGATCGCTGCGCATGAACCGTTTCGAACACTCGGAGCACACGAACTTCTTCT

Function

NR:

description
PREDICTED: transcription factor Sp3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99905 True 524 lncRNA 0.53 2 3946534 4031820

Neighbor

gene id symbol gene type direction distance location
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 926 3925891 ~ 3945608 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 35714 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 178997 3760833 ~ 3767537 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 187319 3754816 ~ 3759215 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 193911 3744006 ~ 3752623 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 77830 4109650 ~ 4112225 (+)
hoxd13a NA coding downstream 349704 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 353619 4385439 ~ 4387003 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 357828 4389648 ~ 4392011 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 362896 4394716 ~ 4397578 (+)
G67448 NA non-coding upstream 116762 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 299920 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 308452 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 327228 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 354294 3586803 ~ 3592240 (+)
G67604 NA non-coding downstream 6776 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 32817 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 124836 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 130536 4162356 ~ 4165072 (+)
G67657 NA non-coding downstream 175870 4207690 ~ 4208541 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 23656 3913638 ~ 3922878 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 666482 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 749916 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2210214 1713812 ~ 1736320 (+)
G66795 NA other upstream 2811545 1127526 ~ 1134989 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 88707 4120527 ~ 4127013 (+)
G67630 NA other downstream 109234 4141054 ~ 4222171 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 378075 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 491466 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 677233 4709053 ~ 4717233 (+)

Expression


Co-expression Network