XLOC_000656


Basic Information

Item Value
gene id XLOC_000656
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51694751 ~ 51717215 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002874
GAGTGACACGTTTGGTCTACCAGATGCGaagatttgttgttgtttttttcctcctCGATTATTCGTAATTTAATTGAGACGTGACCCAGACACATATTATGGGACTGAAAATGAGCTTCTTCTTCTTGCTGACGACTGAGAGGAAGGACAGGCCATCGCGACAGcctgcggaagaaagtgaaacagATTACCTTTGCACAGATGCTGGCAGCGCTGACGATTGGGAATAAGGAATCAGCTTTGGGACGGACTGTGACCTCCACACCGGGGAACCGTTGCGACAGCTTGTCCTGATACTTCTCTGCTGGACCCACAGTGTCCACAAACACCTGAGAGGAAAAACAGACTCGTCATTATGGGCCATTTCTGCGGTTTATCATGCAGGTTTGCTTTGTCTCAATCACCTCTTTGAGCTGCACCCCAGAATCCAGAGCATACTGCACCAGGCCAATCGCTGCATCGTGTGAAAGGGCATTCAGATTGTATTTTGCtctgaaaaaataataacaacaaaacctTGATGTCAGATATACttgcagctatttttttttattctatattctATACAGCGAGGAAAATAAGtactgaacatgtcatgtttgTTTCCTGGAAATAACATTTCTAAAGGAGcttttgacatggaattgaaccagattacGATAAAAACCAGAACAATGTTAACATAAAaagaaacagacaaaaaaaaaatctgaaatattttgtgtaataacaatggaatgacacaaggagaaattACTGAACTATTAAAACGTATTtaacactttatataaaaggcttttgttggtgatggcagcttaaagacgcctctcatatggagaatgaagtcacatgaattgctcaggcatgagtttttcacagacttcaacagagtataAAAatattgatggttctgtgggtctcgtctattaattttgatctttattttgtattctctattggattcaagtcaggtgattggctaggccattccacagttttattttctttctctgaaagcatttgcgagtctccttggctgtgttttggatcattgttttgctgaaatgtccaccctggtttcatcttcatcatctgctaatgtagatgttggactgaagcagcgaatattcatttacactgacgaTGGTTGCTAATAAactag

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002874 True 1162 lncRNA 0.40 3 51694751 51717215

Neighbor

gene id symbol gene type direction distance location
XLOC_000655 CU464066.1 coding upstream 11133 51683519 ~ 51683618 (+)
XLOC_000654 zgc:165656 coding upstream 67622 51615506 ~ 51627129 (+)
XLOC_000653 etaa1 coding upstream 148834 51537250 ~ 51545917 (+)
XLOC_000652 meis1a coding upstream 169665 51475094 ~ 51525086 (+)
XLOC_000651 BX547996.1 coding upstream 229169 51465468 ~ 51465582 (+)
XLOC_000657 prdx2 coding downstream 4636 51721851 ~ 51729862 (+)
XLOC_000658 NA coding downstream 35763 51752978 ~ 51826020 (+)
XLOC_000659 dand5 coding downstream 109831 51827046 ~ 51829291 (+)
XLOC_000660 NA coding downstream 133346 51850561 ~ 51864765 (+)
XLOC_000661 nfixa coding downstream 178932 51896147 ~ 52086496 (+)
XLOC_000643 NA non-coding upstream 676200 51015858 ~ 51018551 (+)
XLOC_000640 NA non-coding upstream 741193 50943592 ~ 50953558 (+)
XLOC_000638 BX855617.1 non-coding upstream 840273 50854364 ~ 50854478 (+)
XLOC_000665 NA non-coding downstream 628740 52345955 ~ 52346899 (+)
XLOC_000666 LO017718.1 non-coding downstream 635947 52353162 ~ 52363107 (+)
XLOC_000667 NA non-coding downstream 646187 52363402 ~ 52368198 (+)

Expression


Co-expression Network