XLOC_006560 (rab11fip2)


Basic Information

Item Value
gene id XLOC_006560
gene name rab11fip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 19610562 ~ 19642288 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012689
GCGCTGATCAAATCCATGGCAACAGAGGAGGAGTCTACACTTCGACCCATGACCGCATCGGCGGAAATGAGGAAGCAGGAAGTCGAGAGCAGGGCTGATGTGGAATACCACACATTTGTTTAAGATGAATTAGTGTCGATTAGAGTAagttattaatttacatttaccgCAGATGTGGAGAACTGAAAGGGTTTCACTGTAGCGCTCTTCACACGTGCTGTGGTGTCGCTCGCTGTGCTCGAGAAAGATGCTTCACAGGTGACCTAAGTTGAAGCGGGGTGAATGTGGAGTGTTTGCGGAGTGTAACAAAATCATTACCTGCTCCATTAATAGATGTGACTGTAATGCTAAATATGCTCTTCACTTGCCCTTGAACAACTTTCGTTTGTATTACCTCTCAGTCGCTCATTTCTTGTTGATTGGAAGCTAAAGGAAAAATGGAAAGGCCAAACTAAAGTTCTACACTTCATCACTTCACACCAAAGTCCATAATTTTACACTTGAATTCATCATGTCATTGGGCGAACAGTCGCAAAAGTGGTTTCCAACCCATGTCCAAGCCACTGTTCTCCAAGCCACAGACCTGCAACCAAAGGGCAAGAATGGAACCAATGATGCCTACACAATCATCCAGCTGGGCAAAGAAAAATACTCCACATCGGTGGCAGAGAAGACCCTGAACCCAGCGTGGAGGGAAGAGGCTTCATTTGAGCTTCCAGGGCTGCTAATGGAGAGCAATCCAGAGGTTTATGAGCTCTGCCTCACAGTCATGCACAGGTCCTTAGTGGGACTGGACAAATTTCTGGGCCAAAAACTCATTAACTTAAATGAGATATTCGACAACAAGGAGCGGCGAAAAACTGACTGGTACACTCTAGACTCACGGCCTGGTAAGAAGAGAAAAGACAGAGGGAAGATTCAAGTTAGCATCCAGTTCATGCGGAACAACATGACCGCCAGCATGTTTGATTTGTCTATGCGAGACAAGCCCCGATCGCCATTCTCCAAGCTGAAGGAGAAGATGAAGGGTCGCAAACACGACGGTGCCTTTTCAGACACATCTTCCGCCATCCTTCCACGCTCAGGGCAGAGTGAGACTGATTCTCTGGCAGACCAGCACCCGCATTCGCACCCACAGGCCCCCACTGAACCCAAGCCAAAACGCTCGCTGCTCACGGGCACGCAGAAACTCTCTGCTGCTCACTCCATGTCTGATCTGATAGGAACTCACTTCAGGAACAAACTCGACTCCATGAACTCCATTGAGGAGAAAGGGGGTGCTTCATCTCACCGTCACTCTCAGAGTGATGGATATGGGTGCCCAGCCAGCGACGTTCAATGCGACCCCTTTTCCGACATCGGAGACAACATGCCCCAGAAATTCGCCACTCTTCCACGTAACCGCAATCCCTTTGAGGGAGATCAGGGGACGCTGTGGGGTGCAGACAAGAAAGAGAAGAAGGAGAAGGTCGGTCTTTTGGGCAGAGTGACTGGGAAGAAAGACGGAAAGAAAACTGGAGCACGAATAGGAAGCTCTGGAGACCTGCGTTCGCCAAACCCTTTTACCAGTGAATCCACTAGCGAAACCAACCCCTTCCTCTCACACTACAGATCcagcAGTGACAACATGAAAAACCCCACCAGTAATGAGGACCTTACACAGAGATTCAAAGCCTCTCCTGAAAAGAAACAGGTCATGAAAAATGCAAGAGAACATGACCTTGAACATCTGCAGACGAGTGTAGCGGCCTACAGCAATCTCTCCTTTGAGGAAGTTGTGCAAGAGCTCATTAAGCAGAAGGATgttgtaaagaagaaagatgcTCATATTCGGGAGTTGGAGGACTACATTGATAACCTGCTGGTCAGGGTAATGGAAGAGACGCCCAGCATCCTGAGAACACCCTATGAGCCCAAGAGAAAAGCTGGAAAGATCTCGAAAAAGTAA
>TCONS_00012690
TGACCGCATCGGCGGAAATGAGGAAGCAGGAAGTCGAGAGCAGGGCTGATGTGGAATACCACACATTTGTTTAAGATGAATTAGTGTCGATTAGAGTAagttattaatttacatttaccgCAGATGTGGAGAACTGAAAGGGTTTCACTGTAGCGCTCTTCACACGTGCTGTGGTGTCGCTCGCTGTGCTCGAGAAAGATGCTTCACAGGTGACCTAAGTTGAAGCGGGGTGAATGTGGAGTGTTTGCGGAGTGTAACAAAATCATTACCTGCTCCATTAATAGATGTGACTGTAATGCTAAATATGCTCTTCACTTGCCCTTGAACAACTTTCGTTTGTATTACCTCTCAGTCGCTCATTTCTTGTTGATTGGAAGCTAAAGGAAAAATGGAAAGGCCAAACTAAAGTTCTACACTTCATCACTTCACACCAAAGTCCATAATTTTACACTTGAATTCATCATGTCATTGGGCGAACAGTCGCAAAAGTGGTTTCCAACCCATGTCCAAGCCACTGTTCTCCAAGCCACAGACCTGCAACCAAAGGGCAAGAATGGAACCAATGATGCCTACACAATCATCCAGCTGGGCAAAGAAAAATACTCCACATCGGTGGCAGAGAAGACCCTGAACCCAGCGTGGAGGGAAGAGGCTTCATTTGAGCTTCCAGGGCTGCTAATGGAGAGCAATCCAGAGGTTTATGAGCTCTGCCTCACAGTCATGCACAGGTCCTTAGTGGGACTGGACAAATTTCTGGGCCAAAAACTCATTAACTTAAATGAGATATTCGACAACAAGGAGCGGCGAAAAACTGACTGGTACACTCTAGACTCACGGCCTGGTAAGAAGAGAAAAGACAGAGGGAAGATTCAAGTTAGCATCCAGTTCATGCGGAACAACATGACCGCCAGCATGTTTGATTTGTCTATGCGAGACAAGCCCCGATCGCCATTCTCCAAGCTGAAGGAGAAGATGAAGGGTCGCAAACACGACGGTGCCTTTTCAGACACATCTTCCGCCATCCTTCCACGCTCAGGGCAGAGTGAGACTGATTCTCTGGCAGACCAGCACCCGCATTCGCACCCACAGGCCCCCACTGAACCCAAGCCAAAACGCTCGCTGCTCACGGGCACGCAGAAACTCTCTGCTGCTCACTCCATGTCTGATCTGATAGGAACTCACTTCAGGAACAAACTCGACTCCATGAACTCCATTGAGGAGAAAGGGGGTGCTTCATCTCACCGTCACTCTCAGAGTGATGGATATGGGTGCCCAGCCAGCGACGTTCAATGCGACCCCTTTTCCGACATCGGAGACAACATGCCCCAGAAATTCGCCACTCTTCCACGTAACCGCAATCCCTTTGAGGGAGATCAGGGGACGCTGTGGGGTGCAGACAAGAAAGAGAAGAAGGAGAAGGTCGGTCTTTTGGGCAGAGTGACTGGGAAGAAAGACGGAAAGAAAACTGGAGCACGAATAGGAAGCTCTGGAGACCTGCGTTCGCCAAACC

Function

symbol description
rab11fip2 Acts upstream of or within neural crest cell migration. Predicted to be located in membrane. Predicted to be active in endosome and phagocytic cup. Is expressed in hindbrain; neural crest; and pharyngeal arch.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101432

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012689 False 1948 mRNA 0.48 6 19610562 19642288
TCONS_00012690 True 1510 mRNA 0.49 4 19626990 19642239

Neighbor

gene id symbol gene type direction distance location
XLOC_006559 NA coding downstream 253551 19350851 ~ 19357011 (-)
XLOC_006558 NA coding downstream 271126 19338477 ~ 19339436 (-)
XLOC_006557 NA coding downstream 333230 19276173 ~ 19277332 (-)
XLOC_006556 NA coding downstream 593729 19010172 ~ 19016833 (-)
XLOC_006555 lzts2a coding downstream 746882 18801094 ~ 18863680 (-)
XLOC_006561 fam204a coding upstream 124608 19766896 ~ 19799824 (-)
XLOC_006562 AL954359.2 coding upstream 575202 20217490 ~ 20222134 (-)
XLOC_006563 AL954359.1 coding upstream 584757 20227045 ~ 20231750 (-)
XLOC_006564 si:ch211-270n8.1 coding upstream 737104 20379392 ~ 20381485 (-)
XLOC_006565 gfra1a coding upstream 750368 20392656 ~ 20519001 (-)
XLOC_006471 BX537274.2 misc downstream 9345657 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 18784337 825904 ~ 826225 (-)
XLOC_006554 CR932361.2 non-coding downstream 895136 18715310 ~ 18715426 (-)
XLOC_006567 CU633804.1 non-coding upstream 904679 20546967 ~ 20547498 (-)
XLOC_006568 NA non-coding upstream 1087546 20729834 ~ 20731888 (-)
XLOC_006569 NA non-coding upstream 1434364 21076652 ~ 21079411 (-)

Expression


Co-expression Network