LOC122351145 (ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887,LOC107565935)


Basic Information

Item Value
gene id LOC122351145
gene name ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887,LOC107565935
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16509560 ~ 16515444 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248026.1
ATGAGGAACTCAGTCGCATTGAGCCAGCCTGGGATTCTACTTCTTCTGGTCACATGTCCTCTGCTGACAATCCTGCATGGTGTAACCTGTAAGGCAGAAAGTGGACACTTAGGGGACAATGATCCTGACAGGTGTATGAGACATCATTTTGTTGAGACCATCACACATCCTATCTACAAGTGCAATTCAAAGATGGTTCTCCTGGCTCGATGCGAGGGTCACTGCAGCCACACGTCCCGCTCAGACCCTCTGATCTCTTTCAGCTCCGTCCTGAAGCAGCCTTTCAAAAGCACGTGTTTCTGCTGCCGTCCACATACCTCCAAACTGAAGGCGGTACGTCTGAGATGCTCGGGCGGGACACGGATAACCGCTACTTACCGTTACATCCTTGCGTGCAGCTGCGAGGAGTGCAGCTGAATAAATTTGTCATGGAGAAAGACCCTCTGGctgaaacacatttaaaaaaaaaaaagtcgaagGTACACTTTATTGCTGATGATTCAGAGCAAGCATTTTACGATTCATTAGCACTGCTGCAATGTTGCCAACAACCCATCAAGACTTCAAGAAGAATCACGTCACGTGTAAAGCGGCGCATGCACTCGGATTTCCAGATGTCGGCGCACCCATCGCACCTGCGCATGCGCTCAGCCAGTCAATTTACTTTTATTGCATTCCATTGTTTTGATCACAGCGTGTGTAAAATAGCGGATGCCGACAACAAAATTGTAAATCTTGAAGGAAATTTGATGAAGCTGAAGGGGAGTTGCTTTGGCGGACTATGTTTTACAATATCTGAGAGACTTGACACACAGACCAGGGAAGAAACGTTTGCATAGACAATGCAAGTGGTGAACTATAAAAGTTTGAGTTATATCTAGAATAGAAATGATGGTTCACCCCTCTAATGTCTGGTTTAGAATCACGTGACacaattttggggtgaattgtCTCTTTATGGTCTCTGGATTTGCTCACGTTCCAGCATACATTTTTGCTCTATTATACTggcttaatatttaaacaatgaaaaatactcTTGTAACGATCATATCGCCAATTTTAGACTTTGTAATCCTCTTACAGGTCTTTTACAGTGGGGTTCACAGCAATCTACCATGCCAGACTGTATGTGGAAAATGTCAGTGTTaagtctgtttgttttatcatcAAAGTCCCGCAATGGCTCATGACACATAATAGCAGCAGGTTGTCAAGCTAATCACGTACAGTTGTGATAACTATGATGTTTGCATTGTGGTATTGTAAAGTAAATGAcaagtactatatatatatatatatatatatatatatatatatatatatata

Function

symbol description
ndp Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP).

NR:

description
PREDICTED: norrin-like

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248026.1 True 1329 mRNA 0.42 2 16509560 16515444

Neighbor

gene id symbol gene type direction distance location
mao mao,LOC107748155,LOC107673703,LOC107565948,LOC107595828,LOC107695498 coding downstream 4633 16477543 ~ 16504927 (-)
LOC122352003 caska,LOC107673660,LOC107565944 coding downstream 90786 16333185 ~ 16418774 (-)
LOC122351999 caska,cask,LOC107565944 coding downstream 209103 16203973 ~ 16300457 (-)
rpl8 rpl8,LOC107595836,LOC107748161,LOC107673716,LOC102782025 coding downstream 326449 16181754 ~ 16183111 (-)
slc5a3b slc5a3,LOC107748166,LOC107673698,LOC107569828,LOC107690482,LOC107595832,LOC107756792,LOC568338 coding downstream 393296 16106759 ~ 16116264 (-)
efhc2 efhc2,LOC107673658,LOC107756743 coding upstream 11081 16526525 ~ 16538075 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding upstream 22924 16538368 ~ 16540651 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding upstream 64287 16579731 ~ 16584061 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding upstream 179310 16694754 ~ 16698639 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding upstream 236559 16752003 ~ 16760172 (-)
G70894 NA non-coding downstream 389241 16118282 ~ 16120319 (-)
LOC122352066 NA non-coding downstream 555584 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 746891 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 865284 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 871124 15628883 ~ 15638436 (-)
LOC122351188 NA non-coding upstream 89923 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 94826 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 97673 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 115042 16630486 ~ 16715102 (-)
G70962 f5,LOC107756778,LOC107748149,LOC107565953,LOC107673674 non-coding upstream 197375 16712819 ~ 16713846 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 737696 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1110123 15389218 ~ 15399437 (-)
G70549 NA other downstream 1203585 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2136886 14359646 ~ 14372674 (-)
G70317 NA other downstream 2255784 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 205360 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 301696 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 371309 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 720428 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 848743 17364187 ~ 17521560 (-)

Expression


Co-expression Network