LOC122351158 (LOC107690624,LOC107595883)


Basic Information

Item Value
gene id LOC122351158
gene name LOC107690624,LOC107595883
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15902347 ~ 15904183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248043.1
CTCAGGCTTTACTTCTCAGTCAGCAATTGCACCATGGTTCCTTGCATCTTTCTTCTCCTCATTGGTGTTCCTTTGGCTGGGGCCATGGAAAGTAGTATTATTGGAGGAAAAGAGGTTAAACGTCATTCCAGGCCATACATGGCATCTATTCAGTGCAGAAATCATCACACCTGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTGAATCGTAGTGACTTCTCTAGTCGAGACCACTTTGAGGTTGTTTTGGGAGCTCACAACATCAAGAACAAGGAGAAGACCGAGCAGAGGATCCCAGTGATTAAATACATTCGACATCCTATGTTTGAACGGAACAATGAAAAGGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAAGAAAGCcaagctgaataaatatgtgAAAGTTATGCCTCTTCCtaagaaaaatggaaaaacaccaGCTAATGTTAAATGCTCTATAGCTGGTTGGGGGTCGAAAACAGCAAATGGAAATGAGATATCGGATGTGATGCGGGAAGTCAGTCTCAAACTGCAGCAGgactcaaaatgtaaaatatggtgGCAGCAGTACTTCGACTCTGAGAGAATGATCTGTAGTGTATCAGATGGGAAACATGCCTTTTTCAAGGGTGATTCCGGAAGTCCTCTTATCTGTAATACTAAACCACAAGGAATTGCTTCATATACCATTAAGGATGACTGTACAAATACCACATATCCCCAGGTTTATCTTAAAATCTCCTACTTTCTCAACTGgattaaaaagaacattaaataaGAATGACTAAATGAATACTCTTACCACTGCaactttaaaaatctttttgttttcattctgaGTTACTGATAAACAAGTGATAAGATTTCTAAACTAACTGGAAACTGAAAGCTCTGAAAACCTTTGAAAGctctgcaaataaaaataaaaatcg

Function

NR:

description
PREDICTED: granzyme B-like, partial

GO: NA

KEGG:

id description
K01353 GZMB; granzyme B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248043.1 True 961 mRNA 0.39 5 15902347 15904183

Neighbor

gene id symbol gene type direction distance location
dnajb11 dnajb11,LOC107595843,LOC107690604,LOC107719809,LOC107659888,LOC107731764,LOC107569729 coding downstream 3195 15894122 ~ 15899152 (-)
satb2 satb2,LOC107731767,LOC107690605,LOC107569722,LOC107595845,LOC107659884,LOC107719815 coding downstream 26250 15834539 ~ 15876097 (-)
rftn2 rftn2,LOC107690607,LOC107731757,LOC107719806,LOC107595849,LOC107569700 coding downstream 173547 15716322 ~ 15728800 (-)
hspd1 hspd1,LOC107569661,LOC107690611,LOC107659893,LOC107595848 coding downstream 194683 15701915 ~ 15707664 (-)
sf3b1 sf3b1,LOC107731751,LOC107569635,LOC107659892,LOC107719800,LOC107595847,LOC107690614 coding downstream 209732 15682700 ~ 15692615 (-)
LOC122351156 LOC107731741,LOC107569997 coding upstream 1845 15906028 ~ 15907567 (-)
ercc1 ercc1,LOC107570013 coding upstream 5101 15909284 ~ 15913570 (-)
olig1 olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892 coding upstream 26438 15930621 ~ 15932536 (-)
olig2 olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629 coding upstream 36707 15940890 ~ 15943090 (-)
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding upstream 59611 15963794 ~ 15966467 (-)
G70660 NA non-coding downstream 139678 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 258071 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 263911 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 480770 15418999 ~ 15421577 (-)
LOC122351294 NA non-coding downstream 639671 15256988 ~ 15262676 (-)
LOC122352066 NA non-coding upstream 43930 15948113 ~ 15953976 (-)
G70894 NA non-coding upstream 214099 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 701184 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 706087 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 708934 16613117 ~ 16613424 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 130483 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 502910 15389218 ~ 15399437 (-)
G70549 NA other downstream 596372 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1529673 14359646 ~ 14372674 (-)
G70317 NA other downstream 1648571 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 816621 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 912957 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 982570 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1331689 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1460004 17364187 ~ 17521560 (-)

Expression


Co-expression Network