nup35 (nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922)


Basic Information

Item Value
gene id nup35
gene name nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8566454 ~ 8569997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248052.1
AAAGCGGAAGTTCAGCGCGCTTGTGTCATTAGAGCACGCGCAACTTCCGCCTGGTTCAAAAAATTtttgcactcttttttttttcacgttcGGTAAAGTAGGGCTGATCTTCTATCAGTGGCTGCCGTGAAAGTGACCCGGCATGGACATCCAGAGCATTGAACCAATGACACTCGGCTCTCCGACCTCCCCCAAGCCTGGGGCTCAGTTTTTACCTGGGTTTCTGATGGGAGACCTGCCCGCTCCCGTCACGCCTCAGCCCAGGTCTTTTGGGTTGACAGGAGGTGGGGCAGAAACGAGGTCTCCTCTTCTGGCTGGTGGGTCTCCTCCGCAGCCAGTGGTCCCGACACCTAAAGACAAGAGTGGAGCCCCTCCAGTCAGGAGCATCTATGACGACCTCAACGGCTCCGCTGTGGGCATGTCGCCTCTCGCTGCTCGCAAACAAGCATTTGCTGGAGTACATACACCATTGTCTGGTCTACCAGGGACGCCAGGAACCgTTTCTAATTTGTTTAGCCCCGCGGGGCAGCAGAGGAAAACAACACTTTCCCCTGCTCAAGTGGATCCGTTCTTCACACAAGGGGATGCTCTGTCTTCAGAAGACCAGCTGGACGACACCTGGGTCACAGTTTTTGGATTCCCTCCGGCATCTGCGTCGTACATCCTTTTACAGTTCGCTCAGTATGGgaacatattaaaacatgtgATGTCTAATACAGGCAACTGGATGCACGTTCAGTATCAGTCTAAACTGCAGGCACGAAAAGCTCTCAGTAAAGATGGAAAGATATTTGGAGAAGCCATAATGATTGGCGTCAAACCTTGTATCGATAAGAGTGTAATGGAGAGTTCAGACAAGAGCAGTGCTCCCTGTTCTGTGTTCACGCCCCCGGTGAAGGCTCCCGGGACCCCCAGTCACCCTCTATCAACTCCCCGATCTGTCATGAGACCCCTCAGTGCTGCTTACAAAGCGTCTAGCAGTGACTACCAGGTTGTATCAGATCAGCAGACGCCGAAAAAGGATGACAGTTTTGTATCGAAAGCAATGGAGTATATGTTTGGATGGTAATCTTTCACTCAAAGGGTCCTAATGGAAAAGCTCCGAGACCATCGACAGCCTCTGATGTGTTGACATTGCTCTAAAAACGGactttttggggtttttgaGCACAAGCACTGAGTGAATACGAAAGCACTTTATATCTTCGCTTGCCGACTAATTAACTATGCGTGCTATTTTACAGAAGATGGACTCTTGAGTGTTTGTCATGGACTGATTTCAGCTGCTGGGTTTggagttgtgtgtgttttgaagttAGTCCCTTTTGTCTGTCCttaaaatcatacaggtttaacAACTAAATCACAAGCATGTGTTTCAGGTCTTAACAAATATGCCAAGAGAAAGTTTTGTTGGATATTTAAGACTCCAAATCATGACACGCTCTTTTGTGGGACTCTGTTGTAGAAAATCTGTTCATGGTTATGATCAGCTTTCTGGGTTTATGTATGAGAATGGTTCGTCGAAGAATATCATTGACACATACAGCTTTTTGAGATCAAGGCCTTAATATAGGATTTATTCATTTGGGTTATATACCTCTGTTTTTAGGAGTTTTGTGGGTTTTCACTAACTTTATCTGTTATTTTAATAGGACAGAAtccatttttttagaaatgtctgAATTTGAAAATGCCTTTTCTCTTTAATAAACATTGATGATTAACTGTA

Function

symbol description
nup35 Predicted to enable phospholipid binding activity and single-stranded DNA binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus; nuclear pore organization; and regulation of transcription, DNA-templated. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore central transport channel and nuclear pore nuclear basket. Orthologous to human NUP35 (nucleoporin 35).

NR:

description
nucleoporin NUP53-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG:

id description
K14313 NUP35, NUP53; nuclear pore complex protein Nup53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248052.1 True 1732 mRNA 0.46 9 8566454 8569997

Neighbor

gene id symbol gene type direction distance location
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding upstream 37583 8520934 ~ 8528871 (+)
ehhadh ehhadh,LOC107596516 coding upstream 47108 8510712 ~ 8519346 (+)
tra2b LOC107668395,LOC107677789,LOC107592988,LOC107749892 coding upstream 107129 8453604 ~ 8459325 (+)
tspearb tspearb,LOC107749903,LOC107677782,LOC107752923,LOC107593006,LOC107668351 coding upstream 113781 8442360 ~ 8452673 (+)
pttg1ipb pttg1ipb,LOC107749904,LOC107677780,LOC107596555 coding upstream 135840 8427846 ~ 8430614 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding downstream 81170 8651167 ~ 8702295 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding downstream 223320 8793317 ~ 8797935 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding downstream 231300 8801297 ~ 8824391 (+)
umps umps coding downstream 257693 8827690 ~ 8831902 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding downstream 396864 8966861 ~ 8976999 (+)
G68678 NA non-coding upstream 343637 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 360491 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 712176 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 1230095 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 1264959 7280767 ~ 7301495 (+)
LOC122351403 NA non-coding downstream 30727 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 256215 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 289476 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 477463 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 493123 9063120 ~ 9064676 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 60311 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 132971 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 223703 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2593331 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2680701 5883927 ~ 5885753 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 293390 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 297100 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 572595 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 586048 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 873128 9443125 ~ 9566997 (+)

Expression


Co-expression Network