itgav (itgav,LOC107663834,LOC107672211,LOC107752904)


Basic Information

Item Value
gene id itgav
gene name itgav,LOC107663834,LOC107672211,LOC107752904
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8801297 ~ 8824391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248053.1
TCACTTCCTGTACGGTGGGACGTCCCGCGGCTCCGTACGAGCAGGACGCTGCATCAGTGCCGTGTCCTACTTTTAGACTTTCACGGGTCGGGCTGGAAACGGATGCGTTTTTATGCAGCGGCCCGCCTGGAATAATGTAACGGTCATCTCCGCGGAATAGTTAGCGCGAGCGCCGCCGTGTTTGTGTTGTTATGGAGTGCGGAGTCAGTGGAGATCATATGTGCTGCTGATCCAGACGTCCACCCACAAACAGATCTCTATCCACTCTCACAGCACACCGAGATACGAAACATGGCCAAGCATCTCGTCTGTTGTTGGATTTGGGTTCTAGCGACTCTTTTCTACTTCGAACATGCACTTTCTTTTAACCTGGACGTTAGCAAACCCACGGTTTTCGCTGGACCTCCAGGAAGTTACTTTGGATTTTCTGTGGATTTCTTCAATCCTGATAGCAAACAGTTAAATATACTGGTTGGCGCACCCAGGGCAAACACCTCTGATCAAACCCCGTCGACAGTCACTGAGAGGGGCGCCGTCTTCAGCTGTCCCTGGCATAAAAGTGGCTCATGCACCCAGATTCAGTTTGACAGCTCTGATGACAGGAAGAATACCAAAGGACAGCAAATGGAGTTTAAGTCAAATCAATGGTTTGGAGCTACTGTGCGATCCTCTGGGGACCATATTCTGgcgTGTGCTCctctctaccagtggagcacgtATGGATTAACAGAGAGAGAGCCTGTTGGAACATGTTACCTGAAGAAAGGCAATAACATTGTGGAATATTCCCCCTGCCGCTCTAgCTCAAACACACCTGAGGGACAAGGATTTTGTCAAGCGGGTTTCAGTGCTGACTTTGTGAAGaAGAACCGGATTGTTGTTGGAGGACCAGGAAGCTTTTATTGGCAAGGTCAGCTGATCTCGGATGACATCACGGAGGTCATCAGCAGATACAATAAGGAGTTTGTAATTCCTTTGAGTAACCAGTTATCAACCAAGTCAGCCGGAATTCAGTATGATGACAGTTATTTGGGTTACTCTGTGGCCGTTGGTGATTTtaatgatgatggtgatgatgATTATGTCACTGGAGTTCCTAGAGGGGAGAAGGCTCTCGGTTATGTCAACATTTTTAACGGGAAGAACATGGAGTCTGTGTACAATTTCACAGGCACACAGATGGCTGCTTACTTCGGTCATTCTGTAGCAGTTGTTGACATCAATAATGACAGGAAGATGGATTTGTTGGTGGGGGCTCCTCTGTTCATGGACCGTGGCTCAGATGGGAAGCTGAGGGAGGTGGGTCAGGTCTATGTCTACCTAGGCAAAGGTGGCTTCACTTTCAACAATGTCATCAAACTCACTGGTTCTGAGATCTATGCTCGATATGGAAGCTCCATCTGCAGCCTGGGAGACCTCAACATGGATGGATATAATGatgtGGCCATTGCTGCCCCATATGGTGGGCAGTTCCACCGTGGCCTGGTGTACATTCATAACGGGCGTCCCACGGGGCCCGATCCTGTGGCCTCTCAAGTTCTGGAAGGAACATGGGCGTCTACTTCCATGCCTTCTAGCTTTGGCTACGCCATGAATGGAGGCACAGATGTCGATCAGAATGGATACCCTGACCTGATTGTTGGGGTGTTTGGAGCTGACAAAGCTGTTCTGTACAGGGCTCGCCCCGTCATCAGTGTGAACACTACACTGGATATCAGTCCACAGATCTTAAATCCTGAAGACAAGAGCTGTACCCTGCCTGGTACAACCACTAAAGTTTCCTGCTTTACTTTGAAATACTGTCTGAAGGCAAATGGCAAGGGAGCGCCATCTTCTCTTTATTTCCAAGTGGATCTGACCCTGGACCGTCTCAAGCACAAGGGAGCCATCAAACGGGTGATGTTCCTCCATAACAAGATGTCTCAGTATTCAAAGAACATGACCGTCTCCAACAACCAAGCACCAGCCTGCGAGGAGCTTCAGGCTTATTTAATAGATGACTCAGAATTTAGGGATAAGATCACacccatttctgtttttatggaGTACAGCTTGAATTACAACGCAGCTGCAGATAAGAGTGGCCTGTTGCCCATCCTCGACCAGTCTACACCTACAAACATCACCAAACAGGCCCACATACTCCTGGATTGTGGCGAAGACAATATTTGCAAGCCAGACTTAAAACTGTCTGTTGTGAGTGACCAGAAAGAGATCTACATAGGTGACGATAACCCCCTGACCTTAGAGGTCACAGCAGAGAATGGAGGAGAGGGGGCGTATGAGGCCGACCTTACCGTTACTCTGCCTTCTCAGGCAGACTTCATTGGGGTTGTGCGTAACAGTGAGGTATTGTCTAGACTGTCCTGTGCCTTCAAGAAAGAGAACCAGACCAGATTGATGGTTTGTGATCTTGGAAACCCAATGAAAGGAGGAACCAAGATAACAGCAGGACTGCGCTTCAGCGTTCACCAGCTCTCTGAACAGGATACAGAAGTCAAGTTTAACTTGCAGATACAGAGCTCAAATCAGTTCAACAATACCAGCAATTTGGTCTCTGTTGTCACAAAGCTTGCTGTGCTGGCCAAAGTGAAATTAAGAGGGGTGTCTGCTCCAGAGCAGGTGTTTTTACCTATCGCTAACTGGCAGCCAAAAGAGAATCCTATTCTAGAGGATGACATTGGACCGCTTGTACAGCACATCTATGAGCTGAGGAACACGGGCCCCAGTACTTTCAGTAAGGCCATTTTGGATGTGCAGTGGCCGTACAGATTCAGCAACGGCTCTCTGCTCTACATCACCAAGTTTGAAGTGGACGGAAACATGAATTGCAGCTCAAACAGGGAGCTCAACCCACTTAATGTCACCaatCCCAAATTTATTGACAAAAATGAGACGTCTGCCAGCGGAGACAGTGCTGAGGGGAGGAACAGACACAGCGTCCACCGCAGAGACCTGGAGGACAAACAAGGGGAAGAGAACCTGGAGATTCTGGATTGTGTGAATGCAGAGTGTCAGGAGATAAAGTGTTGGGTCGGCCGGCTGGAGAAAGGCCAGAGTGccattctatttatttactctAGACTCGCCGTGGGCACGTTTCTCAAGgCTGAAAGTCAAAACAAATCGTACAGTGTTCGATCCTCAGCCTCTTTCAGTGTCATAGAGATGCCATATAAAAATCTGAATCCTGAGCTCCCAGCCAGCGCAACATCGGCCTCTCTGAAGGTGATCTGGAATTCCGAGAACCCTCAGCCTGTCCCAGGATGGGTGGTGGCTCTGGCCGTCCTGGCCGGACTTCTGCTTCTGGCTCTGCTCATCTTTGTCATGTATAAGCTGGGCTTCTTTAATCGTCTGCGGCCGCCCCAGGACGACAGCATAGAGAAAGAGCAGCTTCAGCCTCAGGAGAACggagacagaaacacagaagcCTGAGCTCTTCATCTTCACTCCTCTATCAGTAATGCCTCATCAGCGGGAGTGTGCCTGATTTAGGGAAGTGCTGATGAGAGGGCAACGCATCCTTGGTCTTTATTAGCAGGtcagcatttattcatccacACAGTCCTGAACACGAGACGGAGGCGTTTTAAAGGTACACGGGCGAGGTGGTTTGAACAGGACTAAAGCCCTGTGCCAGCCCCATTTCCCCTGCGTTCCTGTCCTTCTTAAACTGCACTGAGTCTTAAGACGAGATTCGATTTTTGGGTATAGAGAATAATAACGCATTAAAATCATAACACGTTACATATTGTTTacaagtaacaaaaataaagttgatAGAAAATGAGATCATGATTTTATCTGGAAAGATGTGAGGTAGCTTGGCGCATGATTAGTTTGCTGGTTCTGCTTCTTCTGTGGGAGAAACCTTAGGTCCGTTGTTTATCACCGCTCTGCTGTTCGGGGGATTTCTGTAGGACTTTGGACTTTCAGTTCTTACCTGTTTTCTTTGCAGTTATTTCAGCTGTTGGGATTTGATTTCTTATTTGGGCATAAGGTgtattattttgagaaaatattcTTGTTCGTCTACTGTAAACACGTTGTTTTAGAGCAGGGTTGTGTCTGTGATATTTAGAGCATTTGGTtgaatttgtattataaaaaaaaataatatctttGCGCAATAAAATGGTaacgtttttatattttgaaaaccaCCCCTTATGGACAGAGCAccttttattataatgttttaactcaccttttggtttaatatttttcttggtcaaaagtattttttatagatgaaaacactttctatttttttaatgagctcTTTACCCAAATACATGTCGACTGTGTGATTTATcctgattaatattaattgatACAGATACAATAGACCGGTTTGGAAAAACATTAAACGTTTTAAACTGAGGCTAGAATCCATAACaccattttaaaactgtttatattaaaacaattatttaattaatgattttatagATTGAAGGTTGCGGTTCATAGTCACTGGTCTTAATTTTGACTTCGGATATACTGAAATACATAACCcttaacactgaaaaaaaacacaaaagcaagaAAAGCCTGGATTTCTTCCGTTGCTGTATTATAGTAATGCTGCTGCCCATATGAATTTACCCATATTGGGTTGCCATAGGTATGTTGaaaaattgtatacatttataattcaaacaaaattatgctttttccacaaataaaatgatccagaatatattaatttgtatgtaAAGTTTGTACAAAATTATAGAACATAATTATAgcaacaaaaatatgtatttttgagaATCTCCCGTGTCTAAAAATGATCACTGACTGTcttgactttattttttgactttcctttcctttttttccccccacggTTTTGTTTAGCAAAATGTGGTTAATGCTTCTGTAattcaataaacaaatatactgATGTA

Function

symbol description
itgav Acts upstream of or within several processes, including Kupffer's vesicle development; axis elongation involved in somitogenesis; and endothelial cell proliferation. Part of integrin complex. Is expressed in several structures, including axis; diencephalon; head; pleuroperitoneal region; and post-vent vasculature. Human ortholog(s) of this gene implicated in abdominal aortic aneurysm and acute myeloid leukemia. Orthologous to human ITGAV (integrin subunit alpha V).

NR:

description
PREDICTED: integrin alpha-V

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06487 ITGAV, CD51; integrin alpha V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248053.1 True 4913 mRNA 0.45 30 8801297 8824391

Neighbor

gene id symbol gene type direction distance location
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 3362 8793317 ~ 8797935 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 99002 8651167 ~ 8702295 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding upstream 231300 8566454 ~ 8569997 (+)
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding upstream 272426 8520934 ~ 8528871 (+)
ehhadh ehhadh,LOC107596516 coding upstream 281951 8510712 ~ 8519346 (+)
umps umps coding downstream 3299 8827690 ~ 8831902 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding downstream 142470 8966861 ~ 8976999 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 746009 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 777595 9601986 ~ 9610746 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 804223 9628614 ~ 9652625 (+)
LOC122351403 NA non-coding upstream 186313 8600724 ~ 8614984 (+)
G68678 NA non-coding upstream 578480 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 595334 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 947019 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 1464938 7335491 ~ 7336359 (+)
G68808 NA non-coding downstream 1821 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 35082 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 223069 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 238729 9063120 ~ 9064676 (+)
G68895 NA non-coding downstream 351933 9176324 ~ 9178926 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 295154 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 367814 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 458546 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2828174 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2915544 5883927 ~ 5885753 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 38996 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 42706 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 318201 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 331654 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 618734 9443125 ~ 9566997 (+)

Expression


Co-expression Network