umps (umps)


Basic Information

Item Value
gene id umps
gene name umps
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8827690 ~ 8831902 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248054.1
cgcggccAGGGGTTTgaggagagggaaagagagagggaaacgCAGTCAGAGAAGCATGGCTGGTCGAGTCGAAATGTGTGACAGTAGCCTTAGTCTGGATAGTTTAATCCTTAGTCTGCACGACATCCAAGCGGTCAAGTTTGGGACTTTTAAGCTAAAGAGCGGACTCACTTCACCGATATATTTTGACCTTAGAGTAATAGTTTCTCATCCAGCCTTGATGAACCAGGTGGCAGATCTTCTTCATAAGCGTGCTGAGGATGCGGGAGTTGAGTTTGAAAGTGTGTGCGGCGTCCCTTACACAGCTCTTCCTCTGGCCACCATCATCTGCTCTACCAAACACTACCCCATGCTTATTCGGCGAAAGGAGGCAAAGGACTATGGAACGAAACGTCTCATCGAGGGAATCATCCACCCCGGTGACAGATGTCTGATCGTCGAGGATGTCGTGACCAGTGGTAGCAGTGTTCTAGAGACCGCTGAGGTGCTCGAGAAGGAAGGTCTGAAGATCACAGACGCTGTCGTGTTAATGGACAGAGAGCAGGGAGGCAGTGCCAGGCTAGCTGACCGCGGCATCACTCTTCATTCAATCGTTTCTGTCTCCAGGCTTCTGGATGTGTTGCTTAAAGCTGGTCGAATAGACGCTGCCACTTCTCAGAACGTCGAGAGGTTCATTCAGGAAAATAACACCTACATATCAGCCGAGCAGAATGGGCTCTCGGCTCCTAAAAAGAGCCGTAAGGAGCTCAGCTATGGGGCTCGGGCTGCATTGCCAGACACCCACCCTCTCGCTGTCCGCCTGCTGAAGATCACGGAGGACAAGAAGAgcaatctgtgtgtgtctgcagatGTGACTCGCTCTGAGGAGCTGCTGGAGATAGCGGATACGCTGGGGCCACTGATTTGCGTGTTGAAGACTCATGTGGACATTCTGCAGGACTTCACTGCTGATGTCGCCAGCGGCCTGAAAGAGTTGGCTATAAAACACAACTTCCTGATTTTTGAGGATCGCAAGTTTGCAGACATTGGAAACACGGTCAAGCATCAGTATGAAGGCGGTCTCTATAGGATCTCCTCATGGGCTCACATCATTAATGCCCACGCGTTGCCAGGTCCGGGTGTGCTGCAGGGTCTCGGTGCAGTTGGCAAGCCTCTGGGTCACGGCTGTTTGCTCATTGCTCAGATGAGCTCGCAGGGTTCCCTAGCAACAGGAGATTACACTCAAGCAGTGgtCAAGATGGCTGAAGACCATACAGATTTTGTGTTTGGATTCATAAGTGGATCAAAGATCAGTGAGAAGCCTGGTCTGGTTCACATGACTCCAGGAGTGCAAATGCTGACAGGAGGGGATGGACTTGGACAGCAGTATTCAAGTCCAGAAGATGTGATCTGCACCAAAGGCTCTGATATCATCATTGTGGGACGTGGTATTCTTGCCAGCTCAGATCGGATCAGAGCTGCAGAACAATACAAAATGGCAGGCTGGCAGGCATATCTGAAAAGACTCTCACAGGCCAGCTGATGAAACCCCGTCAGGAAAGAGAACAAAGAATTTTCGGGTCCTTTGACATCTGGTCTTGCTTAGTCATTCCATCCATGTTTTAAAAAACTCcctataattattaaaaaagatacataatattgaaaaatttcagtttaatatgaatatgaacgGTGAAGACTGGTGCTTATTGTCTTGTACAGCTAGCTGGATCTGGCCTGCTGGTAACCGTTTTTGTAAGCCTGGATAAGAAAGTATTCAAAGTTGGGgtacattaaaacagtaatactatGGAAACAtctttgctcaagaaacatttcataacaAGGTTTGAATGAGTTGTGCTgcttagtgtttttttgttttgtttatggaaacatgatacatttttcaagaTAAGTGTTAGAAAAAATGCACacatgattacatttatttttgtaacaagcTCATTTTAATGCTTGGCATtggttaaatatttgtaaaaaaaaaaacatctgatttataataattcagaaatatgctatgtatatatgtgtgaagAAGTTCGGAAACTGTTTTACAGCACACCTGACTGGGCTAAGGTATGGCAACTGCATACGCTCCCATGTGGAAATGTTCTTGCCACTCTAGATGTACAGCACAATTAAACATCAAGCTATgttcaacaacaataaaa

Function

symbol description
umps Predicted to enable orotate phosphoribosyltransferase activity and orotidine-5'-phosphate decarboxylase activity. Predicted to be involved in UMP biosynthetic process and pyrimidine nucleobase biosynthetic process. Predicted to act upstream of or within 'de novo' UMP biosynthetic process; 'de novo' pyrimidine nucleobase biosynthetic process; and nucleoside metabolic process. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; mesoderm; and yolk syncytial layer. Human ortholog(s) of this gene implicated in orotic aciduria and purine-pyrimidine metabolic disorder. Orthologous to human UMPS (uridine monophosphate synthetase).

NR:

description
PREDICTED: uridine 5'-monophosphate synthase

GO:

id name namespace
GO:0044205 'de novo' UMP biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0004588 orotate phosphoribosyltransferase activity molecular_function
GO:0004590 orotidine-5'-phosphate decarboxylase activity molecular_function

KEGG:

id description
K13421 UMPS; uridine monophosphate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248054.1 True 2177 mRNA 0.46 6 8827690 8831902

Neighbor

gene id symbol gene type direction distance location
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding upstream 3299 8801297 ~ 8824391 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 29755 8793317 ~ 8797935 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 125395 8651167 ~ 8702295 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding upstream 257693 8566454 ~ 8569997 (+)
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding upstream 298819 8520934 ~ 8528871 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding downstream 134959 8966861 ~ 8976999 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 738498 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 770084 9601986 ~ 9610746 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 796712 9628614 ~ 9652625 (+)
LOC122351880 ugt1a4,LOC107663839,LOC107556441 coding downstream 801251 9633153 ~ 9636711 (+)
G68808 NA non-coding upstream 644 8826212 ~ 8827046 (+)
LOC122351403 NA non-coding upstream 212706 8600724 ~ 8614984 (+)
G68678 NA non-coding upstream 604873 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 621727 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 973412 7853481 ~ 7854278 (+)
LOC122352063 NA non-coding downstream 27571 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 215558 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 231218 9063120 ~ 9064676 (+)
G68895 NA non-coding downstream 344422 9176324 ~ 9178926 (+)
G68896 NA non-coding downstream 348849 9180751 ~ 9184568 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 321547 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 394207 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 484939 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2854567 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2941937 5883927 ~ 5885753 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 31485 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 35195 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 310690 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 324143 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 611223 9443125 ~ 9566997 (+)

Expression


Co-expression Network