LOC122351173 (LOC107670300,LOC107720934,LOC107576887,LOC107549889)


Basic Information

Item Value
gene id LOC122351173
gene name LOC107670300,LOC107720934,LOC107576887,LOC107549889
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5058563 ~ 5059629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248060.1
agatgaagatgaagacgaCACTCGCTCTGCTCTTAGTCATGGAGCTCTATGGACTCTCCTCCGGTCTCATTAAACGACATTTCTTCGTGAAAGACAAGATGACATGGGATTCTGCGAGCAAGTACTGCAAAACTTACTTTCAAGACCTCTCCACTTTCACCGATGAGAACGAGGAACAGCAGTTTTTGGAAGATGCAGCTCATCAACCTTCTGACGCCTGGGTTGGACTCTACAGAGAATCAGGAGTTTGGACTTGGTCGGGAGGTGTGAATGCGACGTATATTAACTGGGATACAAGTAATGAACAACCTGAAAATGGTGACTGTGCTTTTCTACACAAAGGCCATAAGAAACTACATGACATAGACTGCGATGATAAATACTCCTTTTTCTGTATGAACATATCAGATTTTGTTCTTGTGCTGCAGAATGAGACCTGGGAAGAAGCTCTGGAATACTGCCGAAAACAATATAATGATCTGGCAAGTCTGAGTTCACTTAACATGATGGATTCTGCTTCAGGGAAAAGCACACTGGCTGAAACCGAATATGTGTGGACTGGTCTGCGTTTTCTAGCAGGAGACTGGTTCTGGGTCAATGGAGATGATCTTGACTACACAGCCTGGTATCAGAACGAACAGCCCCAGTGTCCTGCAGGAGACCTTCGCTGTGGAGCCCTggacaagaaaacaaagctTTGGACAAACAGAAACTGTGAGGAGAAGCTCAGCTTCTTTTGTTCTACACCGGCTGTAAAAGTTCAACAGCAACAAGcacaaaaacaagaagaagaaagcaTTTGGTAGATGTCCCCCACCACATAATGTGTGTAAATCCAGCGGATCTGtttccaaaa

Function

NR:

description
PREDICTED: macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248060.1 True 856 mRNA 0.45 2 5058563 5059629

Neighbor

gene id symbol gene type direction distance location
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding upstream 51767 4992313 ~ 5006796 (+)
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding upstream 205424 4840938 ~ 4853139 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding upstream 228697 4825378 ~ 4829866 (+)
osbpl6 osbpl6,LOC107670309 coding upstream 286349 4720555 ~ 4772214 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding upstream 352426 4702686 ~ 4706137 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding downstream 7194 5066823 ~ 5069325 (+)
marco NA coding downstream 34613 5094242 ~ 5099376 (+)
en1a LOC107670337,LOC107720935 coding downstream 46221 5105850 ~ 5108390 (+)
usp37 usp37,LOC107670323,LOC107549772 coding downstream 68508 5128137 ~ 5138150 (+)
LOC122351829 LOC107670324,LOC107577992,LOC107578707 coding downstream 82779 5142408 ~ 5148171 (+)
LOC122351367 NA non-coding upstream 6415 5050450 ~ 5052148 (+)
G67872 NA non-coding upstream 33201 5022240 ~ 5025362 (+)
G67867 LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 non-coding upstream 47126 5006890 ~ 5011437 (+)
G67865 NA non-coding upstream 47359 4999928 ~ 5011204 (+)
G67826 NA non-coding upstream 104482 4899485 ~ 4954081 (+)
G67882 NA non-coding downstream 24414 5084043 ~ 5084301 (+)
G67888 NA non-coding downstream 41730 5101359 ~ 5101664 (+)
G67955 NA non-coding downstream 237026 5296655 ~ 5297005 (+)
G67961 LOC107689507,LOC107670332,LOC107752589,LOC107549740,LOC107549921,LOC107730419 non-coding downstream 247389 5307018 ~ 5313560 (+)
G67970 NA non-coding downstream 279340 5338969 ~ 5341289 (+)
LOC122351471 NA other upstream 29924 5025563 ~ 5028639 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other upstream 40225 5015470 ~ 5018338 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 341330 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 495961 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 645403 4409895 ~ 4413160 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 80516 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 345600 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 346274 5405903 ~ 5405975 (+)
trnar-ccu_6 NA other downstream 347847 5407476 ~ 5407548 (+)
trnar-ccu_7 NA other downstream 348620 5408249 ~ 5408321 (+)

Expression


Co-expression Network