osgepl1 (osgepl1,LOC107660598)


Basic Information

Item Value
gene id osgepl1
gene name osgepl1,LOC107660598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19717262 ~ 19720435 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248066.1
aagaagaagaagcgtTCGAGTCACTTGAATTGCCGAAGCGTGTGTTTACTTTAGATTATTGTCGAATTAAATCCGGCAGCATTAACGACAGTGAATCGTCGAGGCTATCGGTATGTTCCCGTGCGCTTTAAACGGAGCTGCTCGGCGCTGGGTGAAGCGCTTCGCGTCAGGAAGAGCTTTCAGTACACTGCGCCCTAGGTTAGTTTTGGGGATTGAGACGAGCTGCGACGAGACCGGAGCGGCTGTGCTGGACGAGACTGGAGTGATTCTGGGAGAATCTCTGCATTCTCAGAAGACGATACACCTGGATGCGGGTGGAATTATCCCAACTGTGGCCCAAAGCctacacaaagaaaacatctCTAGAGTTGTCCAGGAGGCCTTGGACAGAAGTGGCATTGAGCCCGGTGAACTCACAGCTGTGGCCACAACAGTGATGCCTGGTCTTGCCCTTAGTTTAAAGATCGGCTTGGATTTCAGTCTGAAGTTTGTGAGACTTCACGAAAAGCCGTTCATCCCTATACACCACATGGAGGCACATGCCCTCACTGTAAGAATGCTACAACCCTTAGACTTCCCTTTTCTCGTGCTCCTCATCTCTGGTGGTCATTCTCTTCTTGCACTCGCCAAAGGAATAGATGAATTTCTTCTTCTGGGGAAAACACTGGACGTTGCAGTCGGGGACAGTTTAGATAAGATTGCTAGAAGGCTTTCTCTGAGGAATCACCCGGACTGCTTGACTTTGAGCGGTGGACAAGCCATAGAGCTTCTGGCGAAAGAGGGGGATCAACTCGCCTTTCATTTCACTTCACCCATGGAGAAGCTCTACAACTGCAATTTCTCTTTTGCTGGTTTTCAAAGACAGGTGACAatggaaataatgaaaaaagaaacgGAAGAAGGTATAGAAAAAGGACAGGTATTGTCGTGTGCTAAAGACATCGCCGCTGCCTCACAATACACGGCGGCCTCTCACATAGCGAAACGAACACATCGTGCCATTTTGTTCTGTAAATCCAAAGATCTTCTACCGCAGCATAATCCAACTCTGGTTGTTTCAGGAGGAGTAGCAAGTAATGAATACATCAGACAGATTCTGAAAATTGTCACAGACGCCACTGGATTGCATTTGCTTTGCCCTCCGTCAAAGTTATGCACTGATAACGGTGTGATGATTGCATGGAATGGCATTGAGAGACTAAAGCAAGGAAAGGGGATCATGTCCTATACTGAAGAAATCAAATATGAACCCAAGGCACCACTTGGATTAGACATCACTTCAGAAGTTAAAGATGCTGCAATCAAACTTCCCCCATTAAAATTGAGGATACGATCTTGACATGCTGTTAATTATATCtgttaataaattgttatttaaagaaatgtaaatgtgtctGTTTTGCCAAC
>XM_043248067.1
GAAGAGCTTTCAGTACACTGCGCCCTAGGTTAGTTTTGGGGATTGAGACGAGCTGCGACGAGACCGGAGCGGCTGTGCTGGACGAGACTGGAGTGATTCTGGGAGAATCTCTGCATTCTCAGAAGACGATACACCTGGAcaaATTTAGTAAATTTTTAGGTCAGGACTGCATACGTAAATTTCAAACATAACAAAAGGTGCGGGTGGAATTATCCCAACTGTGGCCCAAAGCctacacaaagaaaacatctCTAGAGTTGTCCAGGAGGCCTTGGACAGAAGTGGCATTGAGCCCGGTGAACTCACAGCTGTGGCCACAACAGTGATGCCTGGTCTTGCCCTTAGTTTAAAGATCGGCTTGGATTTCAGTCTGAAGTTTGTGAGACTTCACGAAAAGCCGTTCATCCCTATACACCACATGGAGGCACATGCCCTCACTGTAAGAATGCTACAACCCTTAGACTTCCCTTTTCTCGTGCTCCTCATCTCTGGTGGTCATTCTCTTCTTGCACTCGCCAAAGGAATAGATGAATTTCTTCTTCTGGGGAAAACACTGGACGTTGCAGTCGGGGACAGTTTAGATAAGATTGCTAGAAGGCTTTCTCTGAGGAATCACCCGGACTGCTTGACTTTGAGCGGTGGACAAGCCATAGAGCTTCTGGCGAAAGAGGGGGATCAACTCGCCTTTCATTTCACTTCACCCATGGAGAAGCTCTACAACTGCAATTTCTCTTTTGCTGGTTTTCAAAGACAGGTGACAatggaaataatgaaaaaagaaacgGAAGAAGGTATAGAAAAAGGACAGGTATTGTCGTGTGCTAAAGACATCGCCGCTGCCTCACAATACACGGCGGCCTCTCACATAGCGAAACGAACACATCGTGCCATTTTGTTCTGTAAATCCAAAGATCTTCTACCGCAGCATAATCCAACTCTGGTTGTTTCAGGAGGAGTAGCAAGTAATGAATACATCAGACAGATTCTGAAAATTGTCACAGACGCCACTGGATTGCATTTGCTTTGCCCTCCGTCAAAGTTATGCACTGATAACGGTGTGATGATTGCATGGAATGGCATTGAGAGACTAAAGCAAGGAAAGGGGATCATGTCCTATACTGAAGAAATCAAATATGAACCCAAGGCACCACTTGGATTAGACATCACTTCAGAAGTTAAAGATGCTGCAATCAAACTTCCCCCATTAAAATTGAGGATACGATCTTGACATGCTGTTAATTATATCtgttaataaattgttatttaaagaaatgtaaatgtgtctGTTTTGCCAAC

Function

symbol description
osgepl1 Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to act upstream of or within tRNA threonylcarbamoyladenosine modification. Predicted to be active in mitochondrion. Orthologous to human OSGEPL1 (O-sialoglycoprotein endopeptidase like 1).

NR:

description
probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248066.1 True 1407 mRNA 0.46 7 19717262 19720435
XM_043248067.1 False 1296 mRNA 0.44 8 19717432 19720435

Neighbor

gene id symbol gene type direction distance location
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding upstream 40426 19673260 ~ 19676836 (+)
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding upstream 50649 19643049 ~ 19666613 (+)
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 832937 18793081 ~ 18884325 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding upstream 925896 18773760 ~ 18791366 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding upstream 945523 18760460 ~ 18771739 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding downstream 11920 19732355 ~ 19733971 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 21205 19741640 ~ 19748311 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 46228 19766663 ~ 19778896 (+)
stat1b stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020 coding downstream 61228 19781663 ~ 19790963 (+)
LOC122351701 NA coding downstream 71776 19792211 ~ 19793933 (+)
G71586 NA non-coding upstream 82415 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 96786 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 110061 19606985 ~ 19607201 (+)
G71517 NA non-coding upstream 461029 19256030 ~ 19256233 (+)
G71509 NA non-coding upstream 466105 19250839 ~ 19251157 (+)
G71627 NA non-coding downstream 31147 19751582 ~ 19752090 (+)
G71628 NA non-coding downstream 31873 19752308 ~ 19752693 (+)
G71630 NA non-coding downstream 32795 19753230 ~ 19753756 (+)
G71629 NA non-coding downstream 34089 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 35431 19755866 ~ 19756178 (+)
ormdl1 ormdl1,LOC107602148 other upstream 2858 19709364 ~ 19714404 (+)
G71585 NA other upstream 95769 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 173585 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 785800 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 1027720 18682672 ~ 18689542 (+)
si:dkey-10c21.1 NA other downstream 492960 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 628392 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 704566 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 716723 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 839207 20559642 ~ 20569276 (+)

Expression


Co-expression Network