shox (shox,LOC107748138,LOC107597497,LOC107695485,LOC107673655,LOC107595822)


Basic Information

Item Value
gene id shox
gene name shox,LOC107748138,LOC107597497,LOC107695485,LOC107673655,LOC107595822
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17027849 ~ 17036688 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248081.1
GGTGGCCGTGTATAAATAGTGtgatctgaaaaacacagacataacAGCAGGAGTGATCTAAACCTTCTACACGCAAACATATCGCCGAATTCACCGTTGAGCAGACAAAAAAGATTCGCGttagatacattttaaagtggATTTCTGTAATCAGCCATGGAAGAACTCACGGCGTTCGTGTCGAAATCCTTCGATCAGAAAAGCAAGGAGAGCAGCAAAGAGAGCATCACGTACAGGGAAGTTTTGGAGAGTGGTTTAGCCCGAGCCAGAGAGCTGGGAAACTCGGAGACCAACCTTCAGGAGATTACAGAAACCAACAACAACCATTGTCCGGTACACCTTTACAAGGAGCACGTAGAGCTGGAAAAGGAGAAATTGAAGGAGTTTAACGTGACGCGGGCTGCTGACGGAATTTACGACTGCAAAGACAAGAAGGAGGACGTGAAATCAGAGGACGAGGACGCACAGAGCAAACTGAAGCAGAGACGGAGCAGGACAAATTTTACCTTAGAGCAGCTGAATGAACTGGAGCGCTTATTTGACGAGACGCATTACCCAGACGCCTTCATGCGGGAGGAGTTGAGTCAGAGGCTGGGGCTGTCAGAGGCCCGCGTGCAGGTATGGTTTCAGAACAGAAGAGCGAAATGCCGAAAACAAGAAAATCAAATGCACAaagGCGTTATTTTGGGCACCGCGAGTCACCTGGACGCGTGCAGGGTCGCTCCTTACGTGAATATGGGCGCGCTCAGAATGCCATTTCAACAGGTCCAAGCTCAGTTACAGTTGGAGGGGGTCGGAACGCACTCCCATCCTCACCTGCACCCACACCTCGCGGCCCACGCTCCCTATCTGATGTTCCCGCCCCCGCCCTTTGGATTACCAATCGCGTCGCTGGCAGACTCGGCCTCTGCGGCGGCCGCCGTGGTAGCGGCTGCCAAGAGCAATAGCAAGAACTCCAGCATCGCTGACCTGCGACTCAAGGCAGGACTTCTTGGAGGCCACTGGCTCAGCCCTTTCCAGGCACAGATCACAGCCCCAGGACCATACAAAAATGTCTGGATGTCTGTCTGAAAACCAGCGTTTAGGAgagaagactttttttaaaaaaagcaaaaaggcaGACACAGAGTGAGGCTAGAGGTTGTGTTTTTACGGACAGACACTGAAACTTTGGAATCTCAACCTCaaagtgaaaagaaagagaCGGCCATATTTGCCTCCTACCACTGTGCCGCTGCCTAGTGCACGTGCTCAATTGAAGGATAGACCTATTGGGGCTGGCCTCCATTGTAACTGACATACATCTATGTTGATCACTGCCATGATAACCCTCCACTACAATTCATATCTAAAGCcgttatttgcatttttgaatttttttttctttttcattgttCATTCTGCTGTGGACAAAGACTGGAAACAGCAATAACATCAATGGTACAATCGCCTGGTTTTTAGTGGAATTCTTAtgattctttctttctgttttgggAGGAAATGTTGCGTTGCTGTTACTTCCTTCCGGGCATGTGTATGGACTTTAGCTTTCATTCTCATATTTTGTGCTCTCTTCTTTTTTATGTGATGTGTCCTGGAATAGAAGTGAACCTAGCTTTTGCACTTCAGGTCTTGTATTAAGGGATCTACGATCCTTAACGCAAGATATACTACTTTTATGTACGGGGGAAACAAATTTGGCTTTCGTTTTGCtgaaatgcattgaaatgacttgtttttgtttgtttcaaaaagGATGAACAGTAACTGCAACtttgtaatttaacattttaagaaacaCCGATTTAACTGAAATGCAATTATGTGCAGTTAAGTGCAATACTGTAAATATGGAAAACGTAATATAGCGGTTGATGTTTGCTAAttaaacaatgatttttaaGTTGTTGGGTTTTTGGCACTGATGTCGATGTGTTGAAAGTTCTTCGCCACAAACACATCCTTAAATGCTGTGTAAAAGATCATTTGCTAACTTGTTTGCAACGTGCCATAACTCCCTGAAGTTCAACGGTATTCGAATATAGTTTTGTACACGtgcatttaaagagatattGATATCACCTGAAGGCAGAAAAGGAAGATTCTTTTGACACTGTACAAAAATGCTCTAGGTTCCTGGGTCATAAACATGTCTGGTTTTCAACGTAACAATAAATCAGCCAAAGACAACGATTTGATCACATTAATAGAGgtagaattatttaatttaaagctccaaatacactttttttcagcaaCTGCATCCAGTCTTTTTCCCCATATAAACAAGAACTGTCTACGGTTTCCTGAATTGAATACAATAAGCTTatcaatttgaaaaaaaaaaaaaaaaaagccaaacaaacaacctaacaaaaaaaacagtattattttcaTGACCGTACCATGAAACAGTTTTGCCAGTTCAGACATCAATTGCCTTTGAACTACGATAGTAGATCTTGGTCAGGTCTACCTCTGACAATAAAAGCTACATTGTGGGCTGTTTTCGTTGTTCACCATTACGGTTGTTTAGgaatgtttctgtttctttaattGACGTCATaggtgcttttatttattattttatctgaaagtttataaatgttaaatagtcGAATTTCAAGTGTACATATTTACATggctttgcatttatttttatatattttctaaatgttaacATTTGCAACAGTTTTACGCGAACGTGTGACTGCAGTACATTTGTTTGACTAAAATGTAGCGTGTTTGAGTTTACAAACATTTCAGGGATGGTGGATGAAACCATGAGACTTTGTGTTGAGATTTTCTTGATGCTCCGAGGAATTTGTTGTATCCCATCATATTGCATATGCAAGCATGCCCAAACATGATTCACcattgagtttttttgtttctgttgtttcacgaaaaaaaaaaaaagaatgtacaTCTTGTACAAGTAATCTATcaataaaagttataaatatttgtaa

Function

symbol description
shox Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within bone mineralization; cell population proliferation; and pectoral fin development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; pericardial region; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leri-Weill dyschondrosteosis and SHOX-related short stature. Orthologous to human SHOX (short stature homeobox).

NR:

description
short stature homeobox protein-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248081.1 True 2972 mRNA 0.41 6 17027849 17036688

Neighbor

gene id symbol gene type direction distance location
si:ch211-269e2.1 si:ch211-269e2.1,LOC107597498,LOC107673700,LOC107695463,LOC107756725 coding upstream 89575 16919401 ~ 16938274 (+)
med14 med14,LOC107756768,LOC107673705,LOC107595862,LOC107748179,LOC107695451 coding upstream 111705 16903078 ~ 16916144 (+)
lamp1b lamp1,LOC107756770,LOC107748140,LOC107673715,LOC107695490,LOC107595864 coding upstream 130011 16894423 ~ 16897838 (+)
LOC122351521 LOC107597503,LOC107756774,LOC107695471,LOC107748181,LOC107673720,LOC107595866 coding upstream 177608 16845891 ~ 16850241 (+)
ildr2 ildr2,LOC107695466,LOC107756772,LOC107673718,LOC107597502,LOC107748142 coding upstream 182647 16830433 ~ 16845202 (+)
tfdp1a tfdp1a,LOC107748134,LOC107597491,LOC107595816,LOC107673714,LOC107756763,LOC107695478,LOC108426071 coding downstream 141795 17178483 ~ 17188088 (+)
LOC122352102 gabpa,LOC107695462,LOC107595806,LOC107597487,LOC107748128,LOC107756759 coding downstream 172294 17208982 ~ 17214468 (+)
LOC122351291 LOC107748130,LOC107673722,LOC107695483,LOC107595821 coding downstream 251255 17287943 ~ 17291835 (+)
LOC122351452 gabpa,LOC107756759,LOC107695462,LOC107595806,LOC107748128,LOC107597487 coding downstream 256304 17292992 ~ 17299145 (+)
si:dkey-192g7.3 NA coding downstream 283242 17319930 ~ 17323175 (+)
G71008 NA non-coding upstream 143948 16883642 ~ 16883901 (+)
G70844 NA non-coding upstream 147338 16880073 ~ 16880511 (+)
G70841 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding upstream 160347 16866490 ~ 16867502 (+)
G70837 pou2f1,LOC108266565 non-coding upstream 212447 16814830 ~ 16815402 (+)
G70804 NA non-coding upstream 411785 16615538 ~ 16616064 (+)
G71061 slc25a6,upf3a,LOC107597494,LOC107748177,LOC108426068,LOC107595824,LOC107756767,LOC107673688,LOC107756766,LOC107597564 non-coding downstream 95783 17132471 ~ 17278421 (+)
G71083 LOC107673722,LOC107748130,LOC107595821,LOC107597562,LOC107695483 non-coding downstream 170013 17206701 ~ 17292889 (+)
G71086 NA non-coding downstream 247382 17284070 ~ 17287296 (+)
LOC122351293 NA non-coding downstream 255176 17291864 ~ 17292889 (+)
G71088 LOC107595805,LOC107695460,LOC107597486,LOC107748127,LOC107756757 non-coding downstream 270895 17307583 ~ 17309040 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 108559 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 278148 16745893 ~ 16749701 (+)
G70814 NA other upstream 296488 16728507 ~ 16731361 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other upstream 1126129 15899427 ~ 15901720 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other upstream 1238147 15734570 ~ 15789702 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other downstream 167109 17203797 ~ 17208220 (+)
G71130 NA other downstream 302439 17339127 ~ 17339622 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other downstream 699318 17736006 ~ 17964244 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 1513248 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 1575307 18611995 ~ 18619387 (+)

Expression


Co-expression Network