LOC122351193 (rapgef4,LOC107742951,LOC107671325)


Basic Information

Item Value
gene id LOC122351193
gene name rapgef4,LOC107742951,LOC107671325
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3925891 ~ 3945608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248084.1
AAACACTTAAACAAGAAATCGTTCATTCAAAGTCCCACAAAACTCCACCCCAAATCCATTCCTCAGGTACTCCATCCATCCTGTCACGGGTCTGACAGCTGTCAGTCACAGTGTGGAGCTGTTGGACATACATTATATGTGATGTATAGAGTGGTCTGTCTgcttctgtttgtctctcaggTGCCGTCAGAGAAGATCCTCCGGGCAGGTAAAGTGTTACGAAACACCATCCTGTCCCGAGCGCCTCAAATTATCAGAGACAGGAAGTACCACCTTAAAACATACAGgcagTGCTGCATGGGCACGGAGCTCGTTGATTGGCTGATGCAGCACACTTCCTGTGTTCACTCTCGTGTTCAGGCTGTAGGGATGTGGCAGGTGCTGCTGGAGGAGGGCGTCCTGAACCACGTGGACCAGGAGCTGAGTTTCCAAGATAAGTCTTTTTATCGTTTCCTGGAGGATGAGGCGGAGGACGCAGCCCTGcccactgaagaagagaagaaagacgATGAGGAACTACAGGACACCCTCCTGCTCCTCTCTCAGATCGGACCTGACGCCCATCTGCGAATGATCCTCAGTAAACAGCCTGGCCAGAGGACTGTAGATGACCTGGAGATCATTTATGAGGAGCTGCTGCATATTAAAGCCTTATCACATCTGTCCACGACTGTGAAGAGGGAACTCGCTGGTGTTCTGATATTCGAGTCCCACGCCAAAGCAGGCACAGTGTTGTTTAATCAAGGGGAGGAGGGCACGTCATGGTACATCATCCTGAAGGGCTCCGTCAACGTGGTGATCTATGGAAAGGGTGTAGTTTGCACGTTACACGAGGGAGATGACTTCGGGAAGCTGGCTCTGGTGAACGACGCACCTCGGGCAGCGTCGATCGTACTGAGAGAAGACAACTGCCACTTCCTGAGAGTGGATAAAGAAGACTTCAACAGGATCCTCAGGGATGTGGAAGCGAACACGGTCCGTCTGAAGGAACATGAGGAGGATGTGTTAGTTTTGGAGAAAACTAGCAACAGGGGCTCCAGTTCCTCTCCTCTCAAGTATACTGTGATGTCAGGGACCCCGGAGAAGATTCTGGAGCATCTTCTGGAGACGATGAAACTCGACTCCCAGTTCACTGAGTCAGATCCCGCTCTAGATGACTTTTTGCTTATGCACTGTGTGTTTGTCCCAAACAGTCAGCTGTGTCCTCTTCTCATGGCCCACTATCATGCTCAGCCGTCTCAGGGCAGCGACCAGGAGCGGATGGATTACTCTCTCAATAACAAGCGCCGGGTGATTCGTCTGGTCTTACAGTGGGCCTCCATCAACACAGACCACCTGCAGGAGGAGGACAGCTCTTTCAGCTTCCTCCAGGAGTTTTATGAGGCGGTGTGTGAAGACTCCAGACTCCTTCTAGCTCTGAAAGACCAGCTGCCCGAACTAGAGAAGATCATCAAGCAGAACTGTGATGAAGGCCGGCCCTCTCAGAAAAAGCACAAAGTCCTGCTTCGTCAGTTCAGCACAGGGAACGACAGACTGCAGAAGAGACAGCCAATCAAAAGCACGGACGAGAtcCTGTTTAAGGTGTACTGCGGTGATCATACCTACTCCACGATCCGAGTGCCTGTCGCTGCGTCTGTCAGAGAGGTCATCAGCGCCGTTACCGATAAACTGAGCTCAGGAGACGACCTTCTGCTCATCCACCTCAACTCAGCCGGGGataaagagCTTCTAAAGCCATCCGATGTGTCCATCTTCTCATCGCTGACCATTAATGGCCGTCTGTTTGTCTGCCCGAGGGACCAGATCGACTCTTTGACTCCGCTGCCGGAGCAGGAAGGGCCGTCTGCGGGCTCCATGACCACGTTTGAGCTCGCAGGCTCCAAAGATCTGGCTCATCAGATGACTCTCTACGACTGGGAGCTCTTCGACTGTGTACACGAGAGCGAGCTGATCTACCACACGTTTGGCCGTCAGCACTTCAAGAAGACCACGGCTAATCTGGATCTGTTCCTGCGGCGCTTTAATGAGGTTCAGCTGTGGGTGGTCACCGAGGTTTGTTTGTGTCCCGCGCTCGGCAAACGCGTCCAACTGCTCAAGAAGTTCATCAAGATCGCTGCGCACTGCAAAGAGTTTAAGAATTTGAACTCGTTCTTTGCCATTATCATGGGCCTGGGAAACCCTGCGGTCTGTCGACTCGGTCAGACATGGGAGAAACTGCCCAGCAAGTTCAAGAAGTTTTATGGAGAGTTTGAAAACCTGATGGATCCCTCCAGAAATCACCGAGCGTATCGACTTACAGTGGCCAAGTTAGAACCACCGATCATTCCCTTCATGCCTTTATTAATTAAAGagaatGATTGCAAACACGGTGAGAATCATGAGATACTGCCGGAGCCAGCCATTCAGTAA

Function

symbol description
rapgef4 Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane and regulation of postsynapse organization. Predicted to act upstream of or within adenylate cyclase-activating G protein-coupled receptor signaling pathway; regulation of exocytosis; and secretion by cell. Predicted to be located in plasma membrane. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density. Implicated in autistic disorder.

NR:

description
PREDICTED: rap guanine nucleotide exchange factor 4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248084.1 True 2409 mRNA 0.52 25 3925891 3945608

Neighbor

gene id symbol gene type direction distance location
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 15071 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 158354 3760833 ~ 3767537 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 166676 3754816 ~ 3759215 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 173268 3744006 ~ 3752623 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding upstream 183152 3670562 ~ 3742739 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding downstream 2410 3948018 ~ 3981211 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 164042 4109650 ~ 4112225 (+)
hoxd13a NA coding downstream 435916 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 439831 4385439 ~ 4387003 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 444040 4389648 ~ 4392011 (+)
G67448 NA non-coding upstream 96119 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 279277 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 287809 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 306585 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 333651 3586803 ~ 3592240 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding downstream 926 3946534 ~ 4031820 (+)
G67604 NA non-coding downstream 92988 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 119029 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 211048 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 216748 4162356 ~ 4165072 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 3013 3913638 ~ 3922878 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 645839 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 729273 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2189571 1713812 ~ 1736320 (+)
G66795 NA other upstream 2790902 1127526 ~ 1134989 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 2428 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 35738 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 174919 4120527 ~ 4127013 (+)
G67630 NA other downstream 195446 4141054 ~ 4222171 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 464287 4409895 ~ 4413160 (+)

Expression


Co-expression Network