si:dkey-3d4.3 (LOC107597481,LOC107660648,LOC107596097,LOC107661133,LOC107714494,LOC107597559)


Basic Information

Item Value
gene id si:dkey-3d4.3
gene name LOC107597481,LOC107660648,LOC107596097,LOC107661133,LOC107714494,LOC107597559
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18040897 ~ 18046950 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248085.1
CTGGCACTGGAAGCTACACTTCTCATCACCGCTTATCTTTTCGATGCGGATCGAGGGAAGGGCAGACGCTCAACGACGAATGCAAACGctttttccaGCTGAAGCACTAGTTTGAAATTAACCCATGAGACTCTCAGCGCCTGAGCATGAACAAGGGGAACGGCGCTTGTTTGTGGACCTCAGTGCCTCAGCACTGCCCTGCACCATGTGATCGTTACAAGCATGCGTCTTGTGCCCACAGAGGCCATGTTTACGTACTCGGTGGAAGAGAAAGACGCTTATTGAGAGATTTCTGGAAATATAACGTGGTCTGTGACAAGTGGGTCGAGCTTCCTTGTGATGGTGAAGAAGCGCCTGAAGAACTGGAGGAGCACACAATGGTAGCATATcagGGACTTCTGTATGTCTTCGGAGGAATGCAAGATTCATCATATACCAACTCAAAAATGCCTCTTTGGGTATTCGATACAGTAAAAGAATGCTGGATCAACTGGAAAACAAGGAGCGAAACTTTACAGGGAGTGACACCAGCAAACAGAAAAGGGCACAGTGCTGTCATTTTTGGGTCATCTATGTACGTCTACGGTGGATACATTGATATACGAGGATCAACAAAGGAATTCTGGAAATTTGATTTTGATTCCAGGCTGTGGTCACTGCAGAGCAGCGTACAAGGTGGGCCTGGTCCCAGACATGGTCACTCAGCTATGACATACCAGGACTCTATGTACCTTTACGGCGGCCTGCAGGGCCTGAGAGAACAGAAGGACCTGTGGAGCTGGAGTTCTGCCAGCCAAACCTGGAGCTGCATCAACTTCCATTCAGGTCCTTCTAGGCTGGTCGGTCACTCTGCCGTACCGTTTAAAGACAGCATGCTCATCTTCGGTGGTGGTGAAACCCAGAGCTCTCCTCAAAACGGCTTGTGGAGGTTCAACCTGACAACGAAAACCTGGAAGAAGCTGGCGTTATTGCCTGGATCTCCCTCTCTTTGCCGGATCCATCACTGCAGCATTGGCATAGGCCAGAGTTTCCAGCCAACATCAGCGAACGGCATTTATTTAAGGAAAATTACTACATCTTACAACATCAATAACAAGCTAAGACCATTTAAGAACAAGTGCCAACCATCCCGCCCCATTTTGCAAGAGCCCTGTATTGAGCTCAAGACTTTCCACATGGATAATAAGAAGCATTTACCAGATTTGAGTATTGCAATGAAAGACACAAAGATGAAAGGAAGCTGTCTCACTTTTGAGAACCAGGAGGCTATTAGCGAGAAGCAGAATAGTGGCGACCTGGCTGAGGAAACGGAGGACGATATGTTTCTCCATATGCCTGACTTGCTGTTAGTGCTGGGTGGGAAACCTCTACAAGGACAGCATGTGATTTCTGTGTGGCATATGACAATGGCATAAATctgctgtttttagtgcattCTACTTTCTCTGTGAGAAATTAATGGGCCTTAGCAACAAACACCTATAACACCTGTGGCAGAACAAATTAAATTCAGTCATGCA
>XM_043248086.1
GTTGATAGAGGCTTCTTCGCCCCTCCTTCTCGTGTACTGGCACTGGAAGCTACACTTCTCATCACCGCTTATCTTTTCGATGCGGATCGAGGGAAGGGCAGACGCTCAACGACGAATGCAAACGAAATTAACCCATGAGACTCTCAGCGCCTGAGCATGAACAAGGGGAACGGCGCTTGTTTGTGGACCTCAGTGCCTCAGCACTGCCCTGCACCATGTGATCGTTACAAGCATGCGTCTTGTGCCCACAGAGGCCATGTTTACGTACTCGGTGGAAGAGAAAGACGCTTATTGAGAGATTTCTGGAAATATAACGTGGTCTGTGACAAGTGGGTCGAGCTTCCTTGTGATGGTGAAGAAGCGCCTGAAGAACTGGAGGAGCACACAATGGTAGCATATcagGGACTTCTGTATGTCTTCGGAGGAATGCAAGATTCATCATATACCAACTCAAAAATGCCTCTTTGGGTATTCGATACAGTAAAAGAATGCTGGATCAACTGGAAAACAAGGAGCGAAACTTTACAGGGAGTGACACCAGCAAACAGAAAAGGGCACAGTGCTGTCATTTTTGGGTCATCTATGTACGTCTACGGTGGATACATTGATATACGAGGATCAACAAAGGAATTCTGGAAATTTGATTTTGATTCCAGGCTGTGGTCACTGCAGAGCAGCGTACAAGGTGGGCCTGGTCCCAGACATGGTCACTCAGCTATGACATACCAGGACTCTATGTACCTTTACGGCGGCCTGCAGGGCCTGAGAGAACAGAAGGACCTGTGGAGCTGGAGTTCTGCCAGCCAAACCTGGAGCTGCATCAACTTCCATTCAGGTCCTTCTAGGCTGGTCGGTCACTCTGCCGTACCGTTTAAAGACAGCATGCTCATCTTCGGTGGTGGTGAAACCCAGAGCTCTCCTCAAAACGGCTTGTGGAGGTTCAACCTGACAACGAAAACCTGGAAGAAGCTGGCGTTATTGCCTGGATCTCCCTCTCTTTGCCGGATCCATCACTGCAGCATTGGCATAGGCCAGAGTTTCCAGCCAACATCAGCGAACGGCATTTATTTAAGGAAAATTACTACATCTTACAACATCAATAACAAGCTAAGACCATTTAAGAACAAGTGCCAACCATCCCGCCCCATTTTGCAAGAGCCCTGTATTGAGCTCAAGACTTTCCACATGGATAATAAGAAGCATTTACCAGATTTGAGTATTGCAATGAAAGACACAAAGATGAAAGGAAGCTGTCTCACTTTTGAGAACCAGGAGGCTATTAGCGAGAAGCAGAATAGTGGCGACCTGGCTGAGGAAACGGAGGACGATATGTTTCTCCATATGCCTGACTTGCTGTTAGTGCTGGGTGGGAAACCTCTACAAGGACAGCATGTGATTTCTGTGTGGCATATGACAATGGCATAAATctgctgtttttagtgcattCTACTTTCTCTGTGAGAAATTAATGGGCCTTAGCAACAAACACCTATAACACCTGTGGCAGAACAAATTAAATTCAGTCATGCA
>XM_043248087.1
TACTGGCACTGGAAGCTACACTTCTCATCACCGCTTATCTTTTCGATGCGGATCGAGGGAAGGGCAGACGCTCAACGACGAATGCAAACGctttttccaGCTGAAGCACTAGTTTGAAATTAACCCATGAGACTCTCAGCGCCTGAGCATGAACAAGGGGAACGGCGCTTGTTTGTGGACCTCAGTGCCTCAGCACTGCCCTGCACCATGTGATCGTTACAAGCATGCGTCTTGTGCCCACAGAGGCCATGTTTACGTACTCGGTGGAAGAGAAAGACGCTTATTGAGAGATTTCTGGAAATATAACGTGGTCTGTGACAAGTGGGTCGAGCTTCCTTGTGATGGTGAAGAAGCGCCTGAAGAACTGGAGGAGCACACAATGGTAGCATATcagGGACTTCTGTATGTCTTCGGAGGAATGCAAGATTCATCATATACCAACTCAAAAATGCCTCTTTGGGTATTCGATACAGTAAAAGAATGCTGGATCAACTGGAAAACAAGGAGCGAAACTTTACAGGGAGTGACACCAGCAAACAGAAAAGGGCACAGTGCTGTCATTTTTGGGTCATCTATGTACGTCTACGGTGGATACATTGATATACGAGGATCAACAAAGGAATTCTGGAAATTTGATTTTGATTCCAGGCTGTGGTCACTGCAGAGCAGCGTACAAGGTGGGCCTGGTCCCAGACATGGTCACTCAGCTATGACATACCAGGACTCTATGTACCTTTACGGCGGCCTGCAGGGCCTGAGAGAACAGAAGGACCTGTGGAGCTGGAGTTCTGCCAGCCAAACCTGGAGCTGCATCAACTTCCAACCTGAACTTTAACACTGACGCCTCTATGATCTCTTGCTCTGCAGTTCAGGTCCTTCTAGGCTGGTCGGTCACTCTGCCGTACCGTTTAAAGACAGCATGCTCATCTTCGGTGGTGGTGAAACCCAGAGCTCTC

Function

NR:

description
kelch domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248085.1 False 1520 mRNA 0.47 9 18040933 18046950
XM_043248086.1 True 1530 mRNA 0.47 8 18040897 18046950
XM_043248087.1 False 956 mRNA 0.49 9 18040931 18046339

Neighbor

gene id symbol gene type direction distance location
atp1a1b atp1a1b,atp1a1,LOC107656784,LOC107756749,LOC107569141 coding upstream 368380 17662488 ~ 17672517 (+)
mab21l3 LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107569145 coding upstream 384810 17652270 ~ 17656087 (+)
LOC122351635 NA coding upstream 391295 17648470 ~ 17649602 (+)
rcan1a rcan1a,rcan1,LOC107673717,LOC107597484,LOC107748124,LOC107656781,LOC107756752,LOC107569144 coding upstream 393086 17638644 ~ 17647811 (+)
sona si:dkey-67c22.2,LOC107748125,LOC107673696,LOC107756753,LOC107597485,LOC107656780,LOC107569142 coding upstream 402670 17628318 ~ 17638227 (+)
inhbb LOC107597480,LOC107722876,LOC107660647 coding downstream 2082 18049032 ~ 18056744 (+)
gli2a gli2a,LOC107722873,LOC107660646,LOC107661135,LOC107714335,LOC107596061 coding downstream 66603 18113553 ~ 18179225 (+)
slc15a2 slc15a2,LOC107722867,LOC107660645,LOC107597582 coding downstream 138782 18185732 ~ 18196303 (+)
slc49a4 dirc2,LOC107597477,LOC107596062 coding downstream 158698 18205648 ~ 18240718 (+)
pdia5 pdia5,LOC107661141,LOC107596065,LOC107660642,LOC107555900 coding downstream 321793 18368743 ~ 18412641 (+)
G71221 NA non-coding upstream 10349 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 398459 17641910 ~ 17642438 (+)
G71162 NA non-coding upstream 433067 17607512 ~ 17607830 (+)
G71133 NA non-coding upstream 699980 17340700 ~ 17340917 (+)
G71132 NA non-coding upstream 700328 17340342 ~ 17340569 (+)
G71331 NA non-coding downstream 491530 18538480 ~ 18538700 (+)
G71333 NA non-coding downstream 493933 18540883 ~ 18541336 (+)
G71334 NA non-coding downstream 496824 18543774 ~ 18543998 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 700961 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 842973 18889923 ~ 18893969 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 76653 17736006 ~ 17964244 (+)
G71130 NA other upstream 701275 17339127 ~ 17339622 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other upstream 832677 17203797 ~ 17208220 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other upstream 1121607 16916761 ~ 16919290 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other upstream 1291196 16745893 ~ 16749701 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other downstream 502986 18549936 ~ 18610928 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other downstream 565045 18611995 ~ 18619387 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other downstream 588156 18635106 ~ 18642486 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 635722 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 849652 18896602 ~ 18931462 (+)

Expression


Co-expression Network