LOC122351196 (sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516)


Basic Information

Item Value
gene id LOC122351196
gene name sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4992313 ~ 5006796 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248088.1
attaactttaaattaaaaaaatctatttatcaCTATTACACTATGAGATGACGGCTTGTCTCTGGTTTTATCTGTGCACGTGCAAGAAGGTTCACGTCAAGCCCGCGCGCACGGTCGTATTTTCTTTGCGCGCAATAAATGAGCGCAGCGGACGCTTGTGGGTGAAGGAGAGGCTGTGCTGAGAGACGGTTAGCAGTCAGGTAGATGTTTGGAGGAGATGTCTCAGCAGTCGCTCGTGGGCTGACCGCTCGAGCGTCAAGGAATGCGCGAGAGGAGATGAAACCGAGCGACGCGAGACCTTTCCACCAGAGGACCGAGATTACAGGCTTGTCGTCGAGCTCTGCCGACAGAAGTTTCGTAAATGAAGATTTCTGCCGTTTTACACCTGGTTGCTGTCGCGGCTTTACTTCACTCCTGTTCTCACGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGTGAGCATGCTAACCTTCAAAATCTGGAATGTCATTGAGCTAGCGTTAGCATCCACGCAGGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGAGTGAATCAAAAAGAATTGAAATTCGAATCGAATTGTCTCAGGTTACGCTTTCCAGGGACTGGCCCGAGTTCAATGCATCACACATTTCCTGCGCATGTCAGACTCGCTCGTCGTTACCCGATCCCGCTCTAGGCACGAGGAGCAGGGAAATCGTAACGGCTACCGACCTTTAACTTTCCACAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCT
>XM_043248089.1
tttaaattaaaaaaatctatttatcaCTATTACACTATGAGATGACGGCTTGTCTCTGGTTTTATCTGTGCACGTGCAAGAAGGTTCACGTCAAGCCCGCGCGCACGGTCGTATTTTCTTTGCGCGCAATAAATGAGCGCAGCGGACGCTTGTGGGTGAAGGAGAGGCTGTGCTGAGAGACGGTTAGCAGTCAGGTAGATGTTTGGAGGAGATGTCTCAGCAGTCGCTCGTGGGCTGACCGCTCGAGCGTCAAGGAATGCGCGAGAGGAGATGAAACCGAGCGACGCGAGACCTTTCCACCAGAGGACCGAGATTACAGGCTTGTCGTCGAGCTCTGCCGACAGAAGTTTCGTAAATGAAGATTTCTGCCGTTTTACACCTGGTTGCTGTCGCGGCTTTACTTCACTCCTGTTCTCACGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGTGAGCATGCTAACCTTCAAAATCTGGAATGTCATTGAGCTAGCGTTAGCATCCACGCAGGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCTGACAACCACAGCGACACGCAGCGTCCCATGCCACATCCAAAGACCAGTGTATGAAAACGATTGTGTTTGTCTCGTATTTTCATGGTGTCATAGTCGTTATGAAACATATGCCTGTATCCGCTGAAAGTAActtattagtgctatcaaacgattaatcgcgattaaatGCATTCgaaataaacgtttttgcttacattatatata
>XM_043248090.1
aattaactttaaattaaaaaaatctatttatcaCTATTACACTATGAGATGACGGCTTGTCTCTGGTTTTATCTGTGCACGTGCAAGAAGGTTCACGTCAAGCCCGCGCGCACGGTCGTATTTTCTTTGCGCGCAATAAATGAGCGCAGCGGACGCTTGTGGGTGAAGGAGAGGCTGTGCTGAGAGACGGTTAGCAGTCAGGTAGATGTTTGGAGGAGATGTCTCAGCAGTCGCTCGTGGGCTGACCGCTCGAGCGTCAAGGAATGCGCGAGAGGAGATGAAACCGAGCGACGCGAGACCTTTCCACCAGAGGACCGAGATTACAGGCTTGTCGTCGAGCTCTGCCGACAGAAGTTTCGTAAATGAAGATTTCTGCCGTTTTACACCTGGTTGCTGTCGCGGCTTTACTTCACTCCTGTTCTCACGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGAGTGAATCAAAAAGAATTGAAATTCGAATCGAATTGTCTCAGGTTACGCTTTCCAGGGACTGGCCCGAGTTCAATGCATCACACATTTCCTGCGCATGTCAGACTCGCTCGTCGTTACCCGATCCCGCTCTAGGCACGAGGAGCAGGGAAATCGTAACGGCTACCGACCTTTAACTTTCCACAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCT
>XM_043248091.1
actttaaattaaaaaaatctatttatcaCTATTACACTATGAGATGACGGCTTGTCTCTGGTTTTATCTGTGCACGTGCAAGAAGGTTCACGTCAAGCCCGCGCGCACGGTCGTATTTTCTTTGCGCGCAATAAATGAGCGCAGCGGACGCTTGTGGGTGAAGGAGAGGCTGTGCTGAGAGACGGTTAGCAGTCAGGTAGATGTTTGGAGGAGATGTCTCAGCAGTCGCTCGTGGGCTGACCGCTCGAGCGTCAAGGAATGCGCGAGAGGAGATGAAACCGAGCGACGCGAGACCTTTCCACCAGAGGACCGAGATTACAGGCTTGTCGTCGAGCTCTGCCGACAGAAGTTTCGTAAATGAAGATTTCTGCCGTTTTACACCTGGTTGCTGTCGCGGCTTTACTTCACTCCTGTTCTCACGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCTGACAACCACAGCGACACGCAGCGTCCCATGCCACATCCAAAGACCAGTGTATGAAAACGATTGTGTTTGTCTCGTATTTTCATGGTGTCATAGTCGTTATGAAACATATGCCTGTATCCGCTGAAAGTAActtattagtgctatcaaacgattaatcgcgattaaatGCATTCgaaataaacgtttttgcttacattatatata
>XM_043248093.1
GCATACTGCAGGCCTGCGAGTGTGTGTGGGACCTGGGAAGCGTACGTACGAGACCGAAAAACCTTTGACATCAGGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGTGAGCATGCTAACCTTCAAAATCTGGAATGTCATTGAGCTAGCGTTAGCATCCACGCAGGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGAGTGAATCAAAAAGAATTGAAATTCGAATCGAATTGTCTCAGGTTACGCTTTCCAGGGACTGGCCCGAGTTCAATGCATCACACATTTCCTGCGCATGTCAGACTCGCTCGTCGTTACCCGATCCCGCTCTAGGCACGAGGAGCAGGGAAATCGTAACGGCTACCGACCTTTAACTTTCCACAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCT

Function

symbol description
sctr Enables peptide hormone binding activity and secretin receptor activity. Involved in G protein-coupled receptor signaling pathway. Located in cytoplasmic microtubule.

NR:

description
PREDICTED: secretin receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248088.1 False 1872 mRNA 0.51 12 4994607 5006592
XM_043248089.1 True 1883 mRNA 0.50 13 4994613 5006796
XM_043248090.1 False 1813 mRNA 0.51 12 4994606 5006592
XM_043248091.1 False 1825 mRNA 0.50 13 4994611 5006796
XM_043248093.1 False 1522 mRNA 0.51 12 4992313 5006592

Neighbor

gene id symbol gene type direction distance location
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding upstream 139174 4840938 ~ 4853139 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding upstream 162447 4825378 ~ 4829866 (+)
osbpl6 osbpl6,LOC107670309 coding upstream 220099 4720555 ~ 4772214 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding upstream 286176 4702686 ~ 4706137 (+)
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding upstream 381335 4576182 ~ 4610978 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding downstream 51767 5058563 ~ 5059629 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding downstream 60027 5066823 ~ 5069325 (+)
marco NA coding downstream 87446 5094242 ~ 5099376 (+)
en1a LOC107670337,LOC107720935 coding downstream 99054 5105850 ~ 5108390 (+)
usp37 usp37,LOC107670323,LOC107549772 coding downstream 121341 5128137 ~ 5138150 (+)
G67826 NA non-coding upstream 38232 4899485 ~ 4954081 (+)
G67812 NA non-coding upstream 121431 4870185 ~ 4870882 (+)
G67782 NA non-coding upstream 168537 4823426 ~ 4823776 (+)
G67769 NA non-coding upstream 211778 4778357 ~ 4780535 (+)
G67752 LOC107600734,LOC107683095 non-coding upstream 307132 4677450 ~ 4685181 (+)
G67867 LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 non-coding downstream 94 5006890 ~ 5011437 (+)
G67872 NA non-coding downstream 15444 5022240 ~ 5025362 (+)
LOC122351367 NA non-coding downstream 43654 5050450 ~ 5052148 (+)
G67882 NA non-coding downstream 77247 5084043 ~ 5084301 (+)
G67888 NA non-coding downstream 94563 5101359 ~ 5101664 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 275080 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 429711 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 579153 4409895 ~ 4413160 (+)
G67630 NA other upstream 770142 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 865300 4120527 ~ 4127013 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 8674 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 18767 5025563 ~ 5028639 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 133349 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 398433 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 399107 5405903 ~ 5405975 (+)

Expression


Co-expression Network