LOC122351198 (LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098)


Basic Information

Item Value
gene id LOC122351198
gene name LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10402345 ~ 10405495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248099.1
TCGGGCGAAATCGTCAGCAATTACATGCAGTTAGCGACGTACAAAGAACAGGCCCCTGTTCCTTACTTTGTTTGTTATTTAAGTAGGATCACcgttaattacattattaaactCTGTTCTTAAAATGCCCCGCGAATGTGTCCGTATGATTAGTTCATAGgcacttttaaaatgataccGTAAACTTTTAGACGATTATTTATGGCTGTATTTTGAACAGAACCATCATCCTGCGCTTTGCTGTCGTTTCTCCGGACCGCCCACTGTGCACAAGCGACCAATCACAGCCCAACGCGGTCCAATGATGTTTCAAACGGTGCCCGCGCCATTTTGGTAGGCAAAGCGGAGCTCAGAACAAGAGTAGTGCAGTTCAGGATTTCTTTAGCACAATGGTAATAACCTGTGCTGTGAGGGGTTGTCGTAGCCGCTCCTCGGGTGGTGTCAAAGTGAGCTTTTTTAGAATACCGCGGGTGAGAACACGCGAAGGAGAGGAAACTAGAGCACTTTGTGAAAGGAGACGGGCTACGTGGCTAGCCAGAATAAACAGGAGTAATGTGAAGATCTCCGACGGCTGCAGAGTGTGCTCGGATCACTTCGTCCaaggtagaCCAAGTTACCTTCATGATGAAAAAAATCCTGACTGGGCACCGTCAGTTAAGTTGGAACTAAAGGACGCTCACAGCCAATCAAACTTAAGCAGATATCAGGgagccaaaaataaacagactttaggaaaatgtgaaaaacttGTACTAGAGGCATCTGCTGTGAAAGAAGGCACTGAACGGTCATGCATTAGAGCTACATGTGAGTCAGTGTCCTGCGAAAATGATTTTCAGACAGAGACCTGTGATTCTGACACTGATGCTGCATCGTTAATATCCACAGACAGCACGGAGACTAAGGAGAGCCTCAAAACTCAACTGAAACCCTTACAGGAGAAGATGAGAATCTTACAGGAGTTTCAGCAAACCTTGCATCAAACTGCAGAACGCATTAAGATTCAGGCTAAATGCACAGAGAAGCAGATTAAGGAGAATTTTGTCAAACTTTACCAGTTGTTATCTAATGAAGAGGCAGCGAGGATAAAAGCGctgagagaggaagaagagCAAAAGAGCCGGACACTGAGAAAGAAGATTATGAGGATGAGAAAAGAGATGTCCTCTCTTTCTGCCACAATCTCAGCTGTAGAGGAGGAGATGAAAGCTGAAGATACTTTATTCACACAAAACTATGATGCCACGCTGAAAAGGTTTGTTTCGTTCCTCTTCTGTTGTTCTGAACCCAGACCCACAGCGTCACTGAATACTGAGTGTTTTTCCAGAGTTTCCCAGTGTAAAGCACCGGATCCGGAGGACATTTCTGGAGTTCTGATCAACGTGCCGAAACACCTGAGCaacctgaagttcactgtgttACAGAAGATGCAGAAAACTGTTGATTACACTcccgtgacctttgaccccaaCAGCGCTCACTGTAATCTCATCGTGTCTGAGGATCTGACCAGTGTGAGATACAGCGATGAGGAACAGACTCTTCCTGACAATCCGGAGCGCTTCGACATGTTTGCGTGTGTTCTGGGCTCAGAGGGCTTTGACTCTGGCTCTCGCTGCTGGGACGTCGAGGTCGGAGACAGTACAGGCTGGTTCCTGGGAGTGATGAGCGAATCTGCTCAGAGGAGGAATAAAATCTTCTCAAGGAGTGGAATCTGGCTGGTGGGTCATTTCTGTGGTGAATATAAAGCACACGAACCTCCACGATCTCCAGCTCTCCTCCCGGTGAAAGAGAAACTGCAGAGGATCAGAGTTCAGCTGCACTGGGACACTGGAAAGCTGTCCTTCTCTGACCCTCttactgacacacacatacactctttcacacacacctTCACTGAAACATTATTTCCGTTTTTCGGTGTTGGCTGTGACATTTCTCCTCTGCTCATCTTACCTGTAAAAATGACCGTAATAGAGCCAAATTAATAGTAAAATTGTTTGTCTATTAAGATTATGAATTGATGCATATTACCACTTTCagtaacttgaaataaaaatgtctgcagttattttctgattttgactttttttcattcatgtaGCAAAGATGTGAGAATGATCTGTATGTGCAgagaataaattaatttcaatatttattaccTTGCTGAGAAAACATGTATGTGTGAGTTTCATATTAACATCCTAAGATTTATATCTACATAATCCGGATAGTGTAATTTCTAAATGTCTAAAACCATGGA
>XM_043248100.1
CAAGATCGGGCGAAATCGTCAGCAATTACATGCAGTTAGCGACGTACAAAGAACAGGCCCCTGTTCCTTACTTTGTTTGTTATTTAAGTAGGATCACcgttaattacattattaaactCTGTTCTTAAAATGCCCCGCGAATGTGTCCGTATGATTAGTTCATAGgcacttttaaaatgataccGTAAACTTTTAGACGATTATTTATGGCTGTATTTTGAACAGAACCATCATCCTGCGCTTTGCTGTCGTTTCTCCGGACCGCCCACTGTGCACAAGCGACCAATCACAGCCCAACGCGGTCCAATGATGTTTCAAACGGTGCCCGCGCCATTTTGGTAGGCAAAGCGGAGCTCAGAACAAGAGTAGTGCAGTTCAGGATTTCTTTAGCACAATGGTAATAACCTGTGCTGTGAGGGGTTGTCGTAGCCGCTCCTCGGGTGGTGTCAAAGTGAGCTTTTTTAGAATACCGCGGGTGAGAACACGCGAAGGAGAGGAAACTAGAGCACTTTGTGAAAGGAGACGGGCTACGTGGCTAGCCAGAATAAACAGGAGTAATGTGAAGATCTCCGACGGCTGCAGAGTGTGCTCGGATCACTTCGTCCaaggtagaCCAAGTTACCTTCATGATGAAAAAAATCCTGACTGGGCACCGTCAGTTAAGTTGGAACTAAAGGACGCTCACAGCCAATCAAACTTAAGCAGATATCAGGgagccaaaaataaacagactttaggaaaatgtgaaaaacttGTACTAGAGGCATCTGCTGTGAAAGAAGGCACTGAACGGTCATGCATTAGAGCTACATGTGAGTCAGTGTCCTGCGAAAATGATTTTCAGACAGAGACCTGTGATTCTGACACTGATGCTGCATCGTTAATATCCACAGACAGCACGGAGACTAAGGAGAGCCTCAAAACTCAACTGAAACCCTTACAGGAGAAGATGAGAATCTTACAGGAGTTTCAGCAAACCTTGCATCAAACTGCAGAACGCATTAAGTTGTTATCTAATGAAGAGGCAGCGAGGATAAAAGCGctgagagaggaagaagagCAAAAGAGCCGGACACTGAGAAAGAAGATTATGAGGATGAGAAAAGAGATGTCCTCTCTTTCTGCCACAATCTCAGCTGTAGAGGAGGAGATGAAAGCTGAAGATACTTTATTCACACAAAACTATGATGCCACGCTGAAAAGGTTTGTTTCGTTCCTCTTCTGTTGTTCTGAACCCAGACCCACAGCGTCACTGAATACTGAGTGTTTTTCCAGAGTTTCCCAGTGTAAAGCACCGGATCCGGAGGACATTTCTGGAGTTCTGATCAACGTGCCGAAACACCTGAGCaacctgaagttcactgtgttACAGAAGATGCAGAAAACTGTTGATTACACTcccgtgacctttgaccccaaCAGCGCTCACTGTAATCTCATCGTGTCTGAGGATCTGACCAGTGTGAGATACAGCGATGAGGAACAGACTCTTCCTGACAATCCGGAGCGCTTCGACATGTTTGCGTGTGTTCTGGGCTCAGAGGGCTTTGACTCTGGCTCTCGCTGCTGGGACGTCGAGGTCGGAGACAGTACAGGCTGGTTCCTGGGAGTGATGAGCGAATCTGCTCAGAGGAGGAATAAAATCTTCTCAAGGAGTGGAATCTGGCTGGTGGGTCATTTCTGTGGTGAATATAAAGCACACGAACCTCCACGATCTCCAGCTCTCCTCCCGGTGAAAGAGAAACTGCAGAGGATCAGAGTTCAGCTGCACTGGGACACTGGAAAGCTGTCCTTCTCTGACCCTCttactgacacacacatacactctttcacacacacctTCACTGAAACATTATTTCCGTTTTTCGGTGTTGGCTGTGACATTTCTCCTCTGCTCATCTTACCTGTAAAAATGACCGTAATAGAGCCAAATTAATAGTAAAATTGTTTGTCTATTAAGATTATGAATTGATGCATATTACCACTTTCagtaacttgaaataaaaatgtctgcagttattttctgattttgactttttttcattcatgtaGCAAAGATGTGAGAATGATCTGTATGTGCAgagaataaattaatttcaatatttattaccTTGCTGAGAAAACATGTATGTGTGAGTTTCATATTAACATCCTAAGATTTATATCTACATAATCCGGATAGTGTAATTTCTAAATGTCTAAAACCATGGAAaggttt
>XM_043248101.1
AATCGTCAGCAATTACATGCAGTTAGCGACGTACAAAGAACAGGCCCCTGTTCCTTACTTTGTTTGTTATTTAAGTAGGATCACcgttaattacattattaaactCTGTTCTTAAAATGCCCCGCGAATGTGTCCGTATGATTAGTTCATAGgcacttttaaaatgataccGTAAACTTTTAGACGATTATTTATGGCTGTATTTTGAACAGAACCATCATCCTGCGCTTTGCTGTCGTTTCTCCGGACCGCCCACTGTGCACAAGCGACCAATCACAGCCCAACGCGGTCCAATGATGTTTCAAACGGTGCCCGCGCCATTTTGGTAGGCAAAGCGGAGCTCAGAACAAGAGTAGTGCAGTTCAGGATTTCTTTAGCACAATGGTAATAACCTGTGCTGTGAGGGGTTGTCGTAGCCGCTCCTCGGGTGGTGTCAAAGTGAGCTTTTTTAGAATACCGCGGGTGAGAACACGCGAAGGAGAGGAAACTAGAGCACTTTGTGAAAGGAGACGGGCTACGTGGCTAGCCAGAATAAACAGGAGTAATGTGAAGATCTCCGACGGCTGCAGAGTGTGCTCGGATCACTTCGTCCaaggtagaCCAAGTTACCTTCATGATGAAAAAAATCCTGACTGGGCACCGTCAGTTAAGTTGGAACTAAAGGACGCTCACAGCCAATCAAACTTAAGCAGATATCAGGgagccaaaaataaacagactttaggaaaatgtgaaaaacttGTACTAGAGGCATCTGCTGTGAAAGAAGGCACTGAACGGTCATGCATTAGAGCTACATGTGAGTCAGTGTCCTGCGAAAATGATTTTCAGACAGAGACCTGTGATTCTGACACTGATGCTGCATCGTTAATATCCACAGACAGCACGGAGACTAAGGAGAGCCTCAAAACTCAACTGAAACCCTTACAGGAGAAGATGAGAATCTTACAGGAGTTTCAGCAAACCTTGCATCAAACTGCAGAACGCATTAAGATTCAGGCTAAATGCACAGAGAAGCAGATTAAGGAGAATTTTGTCAAACTTTACCAGTTGTTATCTAATGAAGAGGCAGCGAGGATAAAAGCGctgagagaggaagaagagCAAAAGAGCCGGACACTGAGAAAGAAGATTATGAGGATGAGAAAAGAGATGTCCTCTCTTTCTGCCACAATCTCAGCTGTAGAGGAGGAGATGAAAGCTGAAGATACTTTATTCACACAAAACTATGATGCCACGCTGAAAAGAGTTTCCCAGTGTAAAGCACCGGATCCGGAGGACATTTCTGGAGTTCTGATCAACGTGCCGAAACACCTGAGCaacctgaagttcactgtgttACAGAAGATGCAGAAAACTGTTGATTACACTcccgtgacctttgaccccaaCAGCGCTCACTGTAATCTCATCGTGTCTGAGGATCTGACCAGTGTGAGATACAGCGATGAGGAACAGACTCTTCCTGACAATCCGGAGCGCTTCGACATGTTTGCGTGTGTTCTGGGCTCAGAGGGCTTTGACTCTGGCTCTCGCTGCTGGGACGTCGAGGTCGGAGACAGTACAGGCTGGTTCCTGGGAGTGATGAGCGAATCTGCTCAGAGGAGGAATAAAATCTTCTCAAGGAGTGGAATCTGGCTGGTGGGTCATTTCTGTGGTGAATATAAAGCACACGAACCTCCACGATCTCCAGCTCTCCTCCCGGTGAAAGAGAAACTGCAGAGGATCAGAGTTCAGCTGCACTGGGACACTGGAAAGCTGTCCTTCTCTGACCCTCttactgacacacacatacactctttcacacacacctTCACTGAAACATTATTTCCGTTTTTCGGTGTTGGCTGTGACATTTCTCCTCTGCTCATCTTACCTGTAAAAATGACCGTAATAGAGCCAAATTAATAGTAAAATTGTTTGTCTATTAAGATTATGAATTGATGCATATTACCACTTTCagtaacttgaaataaaaatgtctgcagttattttctgattttgactttttttcattcatgtaGCAAAGATGTGAGAATGATCTGTATGTGCAgagaataaattaatttcaatatttattaccTTGCTGAGAAAACATGTATGTGTGAGTTTCATATTAACATCCTAAGATTTATATCTACATAATCCGGATAGTGTAATTTCTAAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248099.1 True 2263 mRNA 0.44 6 10402350 10405488
XM_043248100.1 False 2218 mRNA 0.44 6 10402345 10405495
XM_043248101.1 False 2167 mRNA 0.44 7 10402358 10405472

Neighbor

gene id symbol gene type direction distance location
dcbld2 dcbld2,LOC107600392,LOC107655516,LOC107706081 coding upstream 122442 10262378 ~ 10279903 (+)
LOC122351607 abi3bp,LOC107748202,LOC107655519 coding upstream 175693 10208849 ~ 10226652 (+)
impg2a impg2,LOC107748205,LOC107655518,LOC107600387,LOC107720123 coding upstream 201517 10185746 ~ 10200828 (+)
mid1ip1a mid1ip1,mid1ip1a,LOC107655494,LOC107748224,LOC107663855,LOC107555231,LOC107600390 coding upstream 235923 10165180 ~ 10166422 (+)
otc otc,LOC107555229,LOC107663890 coding upstream 239409 10160341 ~ 10162936 (+)
LOC122351200 LOC107663844,LOC107555219,LOC107706096,LOC107706098,LOC107663847 coding downstream 488 10405983 ~ 10408038 (+)
LOC122351943 NA coding downstream 6185 10411680 ~ 10415823 (+)
spryd7b spryd7b,spryd7,LOC107655514 coding downstream 36575 10442070 ~ 10446473 (+)
cenpj cenpj,LOC107663885,LOC107720130 coding downstream 73927 10479422 ~ 10487305 (+)
arhgap20 arhgap20,LOC107706091,LOC107663900 coding downstream 100815 10506310 ~ 10515066 (+)
LOC122351843 NA non-coding upstream 222965 10175048 ~ 10179380 (+)
G69042 NA non-coding upstream 294161 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 331454 10070658 ~ 10070891 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding upstream 339909 10062208 ~ 10062436 (+)
G69032 NA non-coding upstream 340458 10061685 ~ 10061887 (+)
G69089 NA non-coding downstream 14987 10420482 ~ 10420692 (+)
G69090 NA non-coding downstream 16548 10422043 ~ 10422253 (+)
LOC122351945 NA non-coding downstream 17719 10423214 ~ 10435142 (+)
G69080 NA non-coding downstream 43206 10448701 ~ 10457161 (+)
G69075 NA non-coding downstream 43512 10449007 ~ 10458086 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 7115 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 227562 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 288989 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 835348 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 1241524 9156045 ~ 9160821 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 616241 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1060109 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1641004 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 2029493 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 2222040 12627535 ~ 12629535 (+)

Expression


Co-expression Network