stx19 (stx19,LOC107664001,LOC107749033,LOC107728237)


Basic Information

Item Value
gene id stx19
gene name stx19,LOC107664001,LOC107749033,LOC107728237
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3760833 ~ 3767537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248107.1
CAAACAGATGCCTAACTGTGACTGGGGGTGTGGTTTTAAACAGGCTGGACCAGATTTCCCAGGAGTCCttgttgtgtttctttaaaatatagtgCATAACTGGAGCAGGGGGAAAACTCACGCTAGCACATATTTGCGTTGCTGGGAGCTGAGGATATGCCAAAGGCTTCCTGAAGGCTTCAGCGGATCCAGCTCAGAGCTCACAAGTCCGGGGGATGAGCACAGAGTTCAAGTTAAAGAGCTCAAGATGAAGAAACATTCAACCACCCGGGGATTAAAAGAAACGCGAGGGTATGAGAAGCAGAGAAATTTTTACACACAGACAACGCTCAAATCTAAGAGAAAATCTGACCTGGTCCCTATCAAGGTCTTCTTCCCCTGCAGTCATGAAGGACCGCATGGAGGAGCTGCGTCAGCGGATGAAGGCCAGCGATAAGCCGGTGGATAACAACCCCTTCGgcgaggacgaggaggaggaggaggacatgGACCCGTCCTCGCTGATAGGCCTGCAGGCGGTGATCTTCGAGGCAGAGCCCGTCCTGGAGAACTTCTTAAAGGAGGCCCAGAGCGTTCGTGACGGCATCGAGGAGCTGAACTCTGAAGTCAGTAAGTTCAGCCAGCAGCAGAGGAACTTTGTGGCCACCATCAGGCGCCTCAGCATCATGAAAAAGGAGAGCAGCATGACGCGAGACATCAAGCTGTTGGCCGAGAGCCTGCATAAAAAGTTAGACGTGCTTTCCAAGCAGGCTAAGCAAACCGAGGCCGAGCTGGGTCCTGACGTCACCACGTCTCGTATCCAGAAGGCCCAGCACGCGGCCCTCTTTCGCCGGTTCCAGCAGGTAATGCGGCAACACAACGACGCCATCCTGAGCAAGCAGAGCAAATGCAAGCAGTTCATCATCCGGCAGCTGGAGGTGTCGGGCCGTGAGGTGTCCGAAGACGAGGTGGACAACATGATAGAGCAGGGCAAGTGGGAGATCTTCAATGAGAACATCATAGTGGATGCAAAGATCACCCGCACGCAGCTCTCAGAGATCGAGCAACGGCACAAAGAGCTCCTGAACCTGGAGAGCAACATGAAGGACCTGCGAGATCTCTTTCTAGACGTGTTCATGCTGGTGGAGGAGCAAGGCCACCAGATTGAGAACATACAAGCAAATGTGGAGAAGACTCAAGACTATGTAGCGGTCACGAAGGAGAAGTTCAAAAGGGCTGCCAGATATAAGAAGAAGAACCCTCTCAGAAGACTGTGCTGTTGTTGCTGTCCTTGGTTCAGATAGCATGGCAGGGCTTGGAAGAGTAAACCATGGGAACGTTGCTCATTTACTGTGCTCTCAAGTACCGAATACAAAAACTGCAGACATTGACCTCTGTCTGATGAagataaaaagcaaaagcaaaagcacTAAGCACTTTTGAgcaatattaaaacagaatatcttatattcagaaaataatattaatcagACTAACTCCACACAATCTTAAAAATTAAGGTTTCAGAAGGGGTTTTTTATAGCAATGCCAgttttggttccccaaagaacttTATCTGCCTTTTTCTTCAACACGGAAGAAGCCTATGGGTGAGACTTCCGGTTCGTTAAACGGTATGGAAAAATGACTAGGAGAATAACAGCTTCCTGTAAAGGGTAAAACAGTTTGTACTACAAACCAGTGTTTATAactaatacaatataatactaatataatattaataatataatacataaaaaaatatgctcGGATGAGACTGGAAACGACACCCATAGATTTGCAAATGGCCACGCCCATTTCTATGtcaagaaaaaggtggatagtgggcatttcttaaaagaaccaaTAAGGCTCCAAAAAATATCGCAGAGTCCGCACCACAACGATAAAGAGAAACGAAGTGGAACAACTTTTTCGAGCTGACGACACAAACattgccagccaatcagaacccATCCTGTTCGCACGAGCTCgagaatttaaagcggcagacGCACGTGCGCTCGAATGAACACGCTATCGTTTGCTGGCGTGGAAGCTAATGTCGTTGTTTGTATGGTtatcgttcttggtgtgaaGGGGGCTTTGGTGCGAAGAGCAGTTTAATAATCTAATTTCCACCGTAAAGAAGTTTTTGTTGAAAGAAAAGTTTCCTTTGGGTCAATGAATGTcaatgaagaacctttatttattttgtagctTTTAGCTGGGTGTTGACATGGAATACAAATGGCTATATAAAGATCGTACAAAGGCTtattatgttttgttaaatCACATAAGTTATGTAAGAGGCAATGAAAGGTAAACTTATGCATGTTGTTATTGTGGGAAAGGTGCACTATTTATTTAGTCTAAttgactttttcatttcagtattatttaacatttgtcattttaatgcattgtctGCTTTATGTCTTATATTTTCAAACAAAGGGCCTTTTGAAAGATTTCTGCAGTTCTACATGTATGGAGGAGTTTACACAACactgttttaacaaaaaaaaaatagtgaataCTTtattagttgtgcatttacacaATAATGACTTATTGTAGAtgtgaaaatgcaattttttttaaaattgcatttcaaattgcaaatatatgaaaatgataCAATCTACAAAAACGTGCAGTGCATCTAGATTTGCGAGCTGGTATTTTGAATGTTCAACACCAATTAGCAAAATGAACCGTTTTGTACAGATAAAAATAGCTGGACGTGGATGAGACCGGAAGCTAGAGCCGTAGACTTTACACGTGGCTGCGTCCATTTTGACGTCGAGAAAAAGGTGCATAGTATGAATGAAATTCGGGTGTATCATATCCGCCATGTTGTGACTTTCGGACGATGAACTACATTTCGTGCGTTAGCTGCATTTCTTATACTGCTATTCATGAATCCTCTCCCTTGGCCTCATACTCCAGAATCCAGCGGTAAAAAGTaggtaataaattatttttttacgatAATAACGGTGTCATGTAAATGCCCCCCATAAAGCTGGGGTCACATTATTAATCCACAATTTCAATTTAGACCTTAGTTTTAGAGACTCCATGTTGAATTTAATGTGCATGAAAATAAGGCTGTGAAGGATAGCAGGTTTTTAAAGCGACCGATGCACACTTTATAAACTCACACACCATGAGTGCTATCAGGCATGTATCATTGAACTGATGGACATTTCTACAGTGTGAGCGCACTTTAATTCGGATGAAGTAGGCTAGTGATAGGCCCACAAAGATATGAGTAACCATTTTAAGAGGCCTAATATTTGCTCACAGTTAATAAGCCTTTACCGTGGAGGTAATTAGAATGAAACTGGCTGGTCTCATGATGGGGTAAATAATGAAGACATGTGGTGAGTCAACAGAGGTGTCAGGTGTTGGCACAGTTTCTAGGATCtgggtgtgtctgtgttttcagaGGAAGACGTGTTGCTAGAAAGTAAAGGTGAAGAATATTATCAGGACGTGCAGTGCAGTCAGAACAGTGCATTTGTGTTCACAAGGGTTCACGGTTTTTATTTGACCAGTGAATTAGCCTCTTAGCTTTTTAACTGTGTCGAATTTcgattgcatttttatttaatgcataaagcTCTATGAAACGGTACAGAACTGAGCATAAGCATTTATAGCCCACTGACTACAGAAACACAGCTTTTGTAAAGATCTTTTAAAGATGCAGTGTTTCCCGTGACGAGGCCCTgtgatcataaaataaatatataaatgtgtcgATATTCCAAAAACGAATATTCGGATGTTATTAAAGCTTGAAACGCTTCCTAAA

Function

symbol description
stx19 Located in cytoplasm. Orthologous to human STX19 (syntaxin 19).

NR:

description
PREDICTED: syntaxin-19

GO: NA

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248107.1 True 3805 mRNA 0.42 2 3760833 3767537

Neighbor

gene id symbol gene type direction distance location
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 1618 3754816 ~ 3759215 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 8210 3744006 ~ 3752623 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding upstream 18094 3670562 ~ 3742739 (+)
vwa8 vwa8 coding upstream 176142 3507925 ~ 3584691 (+)
epsti1 epsti1,LOC107549908 coding upstream 376656 3363734 ~ 3384177 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding downstream 139204 3906741 ~ 3910820 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding downstream 158354 3925891 ~ 3945608 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding downstream 180481 3948018 ~ 3981211 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 342113 4109650 ~ 4112225 (+)
hoxd13a NA coding downstream 613987 4381524 ~ 4382885 (+)
LOC122351161 NA non-coding upstream 114219 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 122751 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 141527 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 168593 3586803 ~ 3592240 (+)
G67396 NA non-coding upstream 319089 3437097 ~ 3441744 (+)
G67448 NA non-coding downstream 61286 3828823 ~ 3829772 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding downstream 178997 3946534 ~ 4031820 (+)
G67604 NA non-coding downstream 271059 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 297100 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 389119 4156656 ~ 4157963 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 480781 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 564215 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2024513 1713812 ~ 1736320 (+)
G66795 NA other upstream 2625844 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2861454 858680 ~ 899379 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 146101 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 180499 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 213809 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 352990 4120527 ~ 4127013 (+)
G67630 NA other downstream 373517 4141054 ~ 4222171 (+)

Expression


Co-expression Network