trim45 (trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366)


Basic Information

Item Value
gene id trim45
gene name trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14868759 ~ 14874692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248126.1
AAACGCGCACGCATAATATGATTGGACGAAGAGACGCGTTCTCAAATAACGCAAGCGAAAAAGTTAACTCTCTCACAAGTTTGGTGCGAGTTGCATGTTTAGAAAATGACTAGATTTGCCAAATATTAGCCGTTTAGAGTACAGCTTCGGTATAAACTCGCGTTATAGTAAAATAGAAACACTGCGATGTCGCTCTGCAAAGAGCGGTTAGTTCCTGAAGAAAAGCCAGAAGCAGTATTAGGTAAAAGCAATGGGGACACTGGGAAGAAGTCCAAAGCGGTGTGTGGTGTTTGCAGTCGGATGTATCGAGACCCTAAAATCCTGCCCTGCTTGCACACGTTCTGCGCGGACTGCATTCGCCAGCGCGAGCCGTTCTCTGAGCGTCGCGTAAACGGGGAACGACGCTCGCCGGAGGATGACACGCACGGGCGCAACGCCGGCTCGACGATCCTGTGTCCCGAGTGCGATTCAGAGGTGGATCTGCCCCCATCGGGCGTGGACGGGCTGACCACTGACCATCTCGCACTGGACGAGGTTTTCGCGGAGACGCTGCTGGTGGGCTGCAGGGTTTTGTGCGACTTGTGCAGCGACAGCGATAGCGACGCGGGGAAGCGCTGCGAGGTGTGCTGCGTCAACCTCTGCGACTTCTGCAGTCAGGCCCACAGGAGACAGAAGAGGACCTCTTCTCACTCTATCCAAAGCCTACAGGAGCTGAAGTCTCAGGGTCGTCTCTCTAGACCCGTCCTGTGCTCGCTTCATCCAGGCCAGGAGTTGCGTCTCTTCTGTGAGCTGTGTGACCTCACTGTGTGCCTGGAGTGTGCGGCCACCTTTCACCGCGACCACCACTGCAGCTCTGCCCACGAAGTCATCAGCCATCATGGCGATCGCATCAGAGATCTGGTGGTCGGGAGCTTAAGGCCTCGTCTCGCCCGTCTGGAGGAGTCTCTGAGACGCTTGGACACATCCCAAGAGGCGCTGCAGGCACGGGCTGATACGTTGGCTGGTGAGATCCGGGCGTTTGCTCGGAGCTATGCCAGCGCGGTGGAGGCACATTGCTGCTCACTGCTGCGGTCACTGGAGGACTTAAAGTTGCAGCGCAGGAATCAACTCAATCTGCAGAAGGCTCAGCTGCAGCAGGCCCTATCTGATGTCCGAGGTGGGGTGGACTTCGCCGAACGCTTGCTCACATGTGGTTCTGATGCTGAAATCCTCAGTGCCAAAGGAGTTACTATGAGGAGACTGATGAACCTCGTGGAGGCAGGATTCGACCCACACCCAACGACGGTTGCCCCTGATAATGCCAGCCGCATTTGTTTCCTTCCTCAAGAGAGCGCTGGAGAGGTGCAGGGATTTCCGGTGGTAGGAGTCATACATACCAAGACTGTGGATCCCAGCAAGTGCACGATCCAGGGAGAAGGTGTGGAACGGGGTCGTGAAGGTCAGAGGGGAGAGTTCACTCTGGTTTGCCGGGACTCCTCCGGAGAGCAGATGGGCCGAGGTGGAGACCCTGTGCTGGTCAGCATAGTGCACAAGGAGAGGAAGGGCTGCTCTGTGGAGGCAGCTGTGGTGGATAAGGCAGATGGTTCCTATGGTGTGTCCTACACCCCGGCTGAAGCAGGTCTCTACTCCGTGTGGGTCTGTGTTAAAGCCCAGCACGTCCAGGGTTCACCGTTTGTGCTAAATGTGAAAAGGAAGTTCAGACGTCATCATGGCGTATTCCATTGTTGTTCTTTCTGCTCAAGTGGGGGCGCTAAAGAGGCGCGCTGCGGCTGCACAGGAATTATGCCAGgAGGGTTTCAGGGTTGTGGCCATGGTCATAAGGGACATCCCGGTAAGCCCCACTGGTCGTGTTGTGGGAGTGTAGTGGAGGCCTCAGAGTGTGTTCTACATAACCTGGGCAGCGTTTCTCCTCGTGGACACCTCAGGACCGTGGAGCTCTGAGAGCAAATATGCTCTGATCAACATAACCATAAACCCATAAACATACTTGAATCTTCTCAACCAGCCTGcgtgaaaaaaaatcacacaaaaaacacGTGTTGTGTTCAAGTGCCAACGCTAAATACTTTACACGCTACGCTATCAGAATTGTAAAGATATACACATTTAGAACTAGTTATTTTTAATCGTAgtccatttttaatttctgtggCATCATATTGTACCACATTTTATCACGATCAGCgtgatttaaagaaatattgtaTGCAGTACTGTTTTATGTttcatctttaataataatcagcatgtttcctttttattttatccagtTATTTGAGCAATAAGTTAcgagttaatatatttttacatgtgtgCATGACTCCAAAGGCTGCGGCTGTCATTGTATTCATCCATCACTTTTCTCTTGTCTTTGTGTATGCTGTATTGGTTCCACAGGTGAAACAACATTTACCTCTCCACTTCTGTGGCTACGAAACTGCCATTTTgaagactgttttttttattcgttGTTAATGTGACGTGTTTTGCACCGTGAATACTGTGTAGTGTGATCTATAAAACATCCATGACAAAATGTGCATCTTTTTACACA

Function

symbol description
trim45 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in chromatin and nucleoplasm. Orthologous to human TRIM45 (tripartite motif containing 45).

NR:

description
PREDICTED: tripartite motif-containing protein 45-like

GO: NA

KEGG:

id description
K12021 TRIM45; tripartite motif-containing protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248126.1 True 2554 mRNA 0.51 6 14868759 14874692

Neighbor

gene id symbol gene type direction distance location
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding downstream 6667 14795431 ~ 14862092 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding downstream 79469 14783457 ~ 14789290 (-)
wdr3 wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854 coding downstream 110173 14749258 ~ 14758586 (-)
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding downstream 247850 14614726 ~ 14620909 (-)
si:rp71-68n21.9 LOC107724495,LOC107569301,LOC107668845,LOC107597372,LOC107658242,LOC107712264 coding downstream 254820 14608083 ~ 14613939 (-)
vtcn1 vtcn1,LOC107712252 coding upstream 800 14875492 ~ 14877656 (-)
morc3a morc3a,LOC107569945,LOC107724492 coding upstream 9419 14884111 ~ 14898125 (-)
klf5b klf5,LOC107740910,LOC107668908,LOC107720143 coding upstream 126772 15001464 ~ 15006670 (-)
gpr18 LOC107740919,LOC107681324,LOC107668869,LOC107748622,LOC107600424,LOC107570094 coding upstream 282412 15157104 ~ 15161278 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding upstream 289607 15164299 ~ 15170670 (-)
G70396 NA non-coding downstream 273417 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 278484 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 305767 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 621431 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 679758 14173817 ~ 14189001 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 42108 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 62432 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 100720 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 138665 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 160127 15034819 ~ 15041730 (-)
LOC122351495 NA other downstream 496085 14359646 ~ 14372674 (-)
G70317 NA other downstream 614983 14196479 ~ 14253776 (-)
G70294 NA other downstream 928891 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 955816 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 1055432 13807822 ~ 13813327 (-)
G70549 NA other upstream 428411 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 514526 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 896729 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1846112 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1942448 16817140 ~ 16823775 (-)

Expression


Co-expression Network