chaf1b (chaf1b,LOC107748217,LOC107663888,LOC107655528,LOC107720114,LOC107572528)


Basic Information

Item Value
gene id chaf1b
gene name chaf1b,LOC107748217,LOC107663888,LOC107655528,LOC107720114,LOC107572528
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10030801 ~ 10038362 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248132.1
ATCTGGCAACCCTCGAAACCGGAAGTGCTCGTTCTCGGAAAGCTGCGCGGGAAAGGCGTCTGTTTGGGTGAAAGCGGGAGAGATACACAAGAGCAACTTGTGCTGAACAACTGTTAAGAATTTTGCAACTTATCGAGGTAACTGGTGTCAGGATGAAGGTGGTAACCTGTGAGATCGCCTGGCACAATAAGGAGCCGGTGTACAGTCTAGATTTCCAGCAGAGCGGTGAGGGAAAGATACAGCGGCTCGCTACAGCTGGGGTGGACACCACAGTGCGGATGTGGCGTGTGGATAAAGGGCCCGATGGGAAGGCAGTAGTTGAGTTTTTGTCTAACCTGGCCCGACACACTAAAGCAGTGAACGTAGTGCGGTTCTCACCCACGGCTGAAGTCTTGGCTTCTGGAGCAGATGATGCTGCGATCTTGCTTTGGAAACTGAATGACAATAAGGAGCCTGAGCTAACCCCGACCTTTCAGGAGAATGAAGATGATCAGCTCAATAAAGAGAGCTGGAGTGTGGTCAAAACACTGAGGGGGCACATTGAGGATGTGTATGACATCTCCTGGACCAGCGATGGGAATTTCATGGTTTCAGGCTCAGTGGACAACACTGCCATCATGTGGGATGTCAAAAAGGGACAAaagatgtgcatttttaatgatcATAAGAGTTATGTGCAAGGAGTAACATGGGACCCTCTTGGACAGTACATCAGCACATTGAGCTGTGACAGGGTGATGCGCGTGTACAGTGCTCACAGCAGGAAAAAATCTTACTGTGTGAGTAAAATGACTTCAGCTGCCGCTCCAGACGGAGAGGTGAAGAACTACAGAATGTTCCACGATGACAGCATGAGATCGTTCTTCAGACGCCTCACATTCACACCAGATGGGTCATTCCTCCTCGCACCagCTGGGTGTGTCGAGGCTGGAGAGAATGTTACAAACACAACATATGTATTCTCCAGAAAAAGCTTTAAGAGGCCCATTGCTCATTTGCCCTGTCCATCTAAAGCCACGCTGGCAGTGCGCTGCAGTCCAGTGTACTATGAGCTGAGGACAAAAAGAGCTGAAGATGGTTCACTGAAGCCAGTGTCAAACACGTTTAATTTACCGTATCGGCTGGTGTTTGCGGTTGCATCAGAAGACTCTGTCTTCTTTTATGACACACAACAGACACTGCCGTTTGGATACGTGTCCAACATTCATTATCACACGCTGAGTGATCTCAGCTGGTCTCGTGACGGCTCCTTCTTGACCGTCTCGTCCACGGACGGCTACTGTTCCTTCGTGTCGTTTGAGGAAGGGGAGCTGGGCACTCCACTGAAGGAGCGACCCCCGCTGGAGATGGTGACCCCATCCTCTACTAATGAGAAGAAAGGCAAGAGACTCTCAGCCAATGGCAGAACTGCTTCCCCGGTCCCTCGCCAGGCCAGCACACCTGCACAGGAAAAGGAGAAAGAGGGATCTGCTGGCCTTGCGACCTCCAAGACTCCCAGCGTATCTGGTCCAGAAGAGAAACGCACACCTCAAGCTCAGCAAAGCAAACCTCAGCCCAGAAGAATCACGCTCAATACTCTAGAGGGCTGGGGCAAACCCAGCACCCCCAAATCACCAGCAACTGCTCCCAACACACCCAAATCTGCTCCTTCCACCCCTGGATCCAGCAGAGGACCCCTGACTCCTCTTACAGCCCCCAGCACTCCCCTAGGACTCCTCAACTCCAAAAATACCACAACTCCCAAAGGACCAACTCCTAGACGTATTTCACTGACTCCAATTGTCACCCCATCTTCCACTGAGAAAGCCAAACACGAGAGACCATCTCCCCCCAGTGACCCAGCGTGCAAACCTCCTGAATCTAAGAGGTCCAAGACTGATGCTCCCAATGGTTCTGCCCAGAACAATGAACAAAAAGTGGACACAGAACCCAGCATCAAACCCCAGGAGCCATAAACATTGACTGTGCTTCTTTGTGCCTCTTTCTTAGCACTCACATCCTCAGAGATGAAGTACACTCATAAACCAGTACATTAAACACCTGATCCCATGGACATATGGAGTTATGAACTTGCATGATATGTTTCTAAAACCCATCTTCGCTTTCATTTTCAgtgtctgttttctatttgaagaggggaaaatacatgtaattattCTCCACAACAACCTACTCCCTCATGActtaaattcctttttttatcttatgaacagaaatgttttacttttgtacCATCTGTTAGAATTTTCTGCATGAATATTcttttttgaagtttaaaaatTGATGTGATTGCAATGTTTTGTAAAGATTTGCTTTAACATTTTgtgattcttaaaaaaaaaactaaaagtgttAAATGACTTGC
>XM_043248133.1
TGAGATCTGGCAACCCTCGAAACCGGAAGTGCTCGTTCTCGGAAAGCTGCGCGGGAAAGGCGTCTGTTTGGGTGAAAGCGGGAGAGATACACAAGAGCAACTTGTGCTGAACAACTGTTAAGAATTTTGCAACTTATCGAGGTGTCAGGATGAAGGTGGTAACCTGTGAGATCGCCTGGCACAATAAGGAGCCGGTGTACAGTCTAGATTTCCAGCAGAGCGGTGAGGGAAAGATACAGCGGCTCGCTACAGCTGGGGTGGACACCACAGTGCGGATGTGGCGTGTGGATAAAGGGCCCGATGGGAAGGCAGTAGTTGAGTTTTTGTCTAACCTGGCCCGACACACTAAAGCAGTGAACGTAGTGCGGTTCTCACCCACGGCTGAAGTCTTGGCTTCTGGAGCAGATGATGCTGCGATCTTGCTTTGGAAACTGAATGACAATAAGGAGCCTGAGCTAACCCCGACCTTTCAGGAGAATGAAGATGATCAGCTCAATAAAGAGAGCTGGAGTGTGGTCAAAACACTGAGGGGGCACATTGAGGATGTGTATGACATCTCCTGGACCAGCGATGGGAATTTCATGGTTTCAGGCTCAGTGGACAACACTGCCATCATGTGGGATGTCAAAAAGGGACAAaagatgtgcatttttaatgatcATAAGAGTTATGTGCAAGGAGTAACATGGGACCCTCTTGGACAGTACATCAGCACATTGAGCTGTGACAGGGTGATGCGCGTGTACAGTGCTCACAGCAGGAAAAAATCTTACTGTGTGAGTAAAATGACTTCAGCTGCCGCTCCAGACGGAGAGGTGAAGAACTACAGAATGTTCCACGATGACAGCATGAGATCGTTCTTCAGACGCCTCACATTCACACCAGATGGGTCATTCCTCCTCGCACCagCTGGGTGTGTCGAGGCTGGAGAGAATGTTACAAACACAACATATGTATTCTCCAGAAAAAGCTTTAAGAGGCCCATTGCTCATTTGCCCTGTCCATCTAAAGCCACGCTGGCAGTGCGCTGCAGTCCAGTGTACTATGAGCTGAGGACAAAAAGAGCTGAAGATGGTTCACTGAAGCCAGTGTCAAACACGTTTAATTTACCGTATCGGCTGGTGTTTGCGGTTGCATCAGAAGACTCTGTCTTCTTTTATGACACACAACAGACACTGCCGTTTGGATACGTGTCCAACATTCATTATCACACGCTGAGTGATCTCAGCTGGTCTCGTGACGGCTCCTTCTTGACCGTCTCGTCCACGGACGGCTACTGTTCCTTCGTGTCGTTTGAGGAAGGGGAGCTGGGCACTCCACTGAAGGAGCGACCCCCGCTGGAGATGGTGACCCCATCCTCTACTAATGAGAAGAAAGGCAAGAGACTCTCAGCCAATGGCAGAACTGCTTCCCCGGTCCCTCGCCAGGCCAGCACACCTGCACAGGAAAAGGAGAAAGAGGGATCTGCTGGCCTTGCGACCTCCAAGACTCCCAGCGTATCTGGTCCAGAAGAGAAACGCACACCTCAAGCTCAGCAAAGCAAACCTCAGCCCAGAAGAATCACGCTCAATACTCTAGAGGGCTGGGGCAAACCCAGCACCCCCAAATCACCAGCAACTGCTCCCAACACACCCAAATCTGCTCCTTCCACCCCTGGATCCAGCAGAGGACCCCTGACTCCTCTTACAGCCCCCAGCACTCCCCTAGGACTCCTCAACTCCAAAAATACCACAACTCCCAAAGGACCAACTCCTAGACGTATTTCACTGACTCCAATTGTCACCCCATCTTCCACTGAGAAAGCCAAACACGAGAGACCATCTCCCCCCAGTGACCCAGCGTGCAAACCTCCTGAATCTAAGAGGTCCAAGACTGATGCTCCCAATGGTTCTGCCCAGAACAATGAACAAAAAGTGGACACAGAACCCAGCATCAAACCCCAGGAGCCATAAACATTGACTGTGCTTCTTTGTGCCTCTTTCTTAGCACTCACATCCTCAGAGATGAAGTACACTCATAAACCAGTACATTAAACACCTGATCCCATGGACATATGGAGTTATGAACTTGCATGATATGTTTCTAAAACCCATCTTCGCTTTCATTTTCAgtgtctgttttctatttgaagaggggaaaatacatgtaattattCTCCACAACAACCTACTCCCTCATGActtaaattcctttttttatcttatgaacagaaatgttttacttttgtacCATCTGTTAGAATTTTCTGCATGAATATTcttttttgaagtttaaaaatTGATGTGATTGCAATGTTTTGTAAAGATTTGCTTTAACATTTTgtgattcttaaaaaaaaaactaaaagtgttAAATGACTTGC

Function

symbol description
chaf1b Acts upstream of or within embryonic organ development; mitotic cell cycle; and retina development in camera-type eye. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in head; immature eye; optic tectum; pectoral fin; and trunk. Orthologous to human CHAF1B (chromatin assembly factor 1 subunit B).

NR:

description
PREDICTED: chromatin assembly factor 1 subunit B isoform X1

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248132.1 True 2365 mRNA 0.48 14 10030805 10038362
XM_043248133.1 False 2362 mRNA 0.48 14 10030801 10038362

Neighbor

gene id symbol gene type direction distance location
LOC122351209 LOC107748218 coding upstream 249 10022693 ~ 10030552 (+)
LOC122351208 LOC107663876,LOC107707766,LOC107724486,LOC107569399 coding upstream 8571 10007942 ~ 10022230 (+)
LOC122351484 LOC107663876,LOC107707766,LOC107724486,LOC107569399 coding upstream 24289 9993877 ~ 10006512 (+)
LOC122351260 hs6st3b,LOC107733651,LOC107555209,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 124620 9895081 ~ 9906181 (+)
LOC122352127 il1rapl1,LOC107756873,LOC107677935,LOC107698784 coding upstream 145868 9838315 ~ 9884933 (+)
si:dkey-229b18.3 LOC107748215,LOC107663849,LOC107720115,LOC107655527,LOC107572534 coding downstream 3803 10042165 ~ 10051534 (+)
gja8a cx50.5,LOC107748212,LOC107555237,LOC107720117,LOC107600427,LOC107655525 coding downstream 43914 10082276 ~ 10086961 (+)
asb11 asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386 coding downstream 75632 10113994 ~ 10117548 (+)
sytl5 sytl5,LOC107555233,LOC107663897,LOC107748209,LOC107655524 coding downstream 79499 10117861 ~ 10139245 (+)
otc otc,LOC107555229,LOC107663890 coding downstream 121979 10160341 ~ 10162936 (+)
G69003 NA non-coding upstream 139221 9890651 ~ 9891580 (+)
G68908 NA non-coding upstream 455147 9575421 ~ 9575654 (+)
G68901 NA non-coding upstream 618066 9255332 ~ 9412735 (+)
G68900 NA non-coding upstream 789414 9240938 ~ 9241387 (+)
G68897 NA non-coding upstream 836498 9180904 ~ 9194303 (+)
G69028 NA non-coding downstream 17134 10055496 ~ 10056501 (+)
G69031 NA non-coding downstream 22696 10061058 ~ 10061611 (+)
G69032 NA non-coding downstream 23323 10061685 ~ 10061887 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding downstream 23846 10062208 ~ 10062436 (+)
G69034 NA non-coding downstream 32296 10070658 ~ 10070891 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 463804 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 869980 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 880708 9142592 ~ 9150093 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 1159168 8867097 ~ 8871633 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other upstream 1164496 8863387 ~ 8866305 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other downstream 53988 10092350 ~ 10113356 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 128974 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 290369 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 983374 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1427242 11465604 ~ 11490149 (+)

Expression


Co-expression Network