lypd6 (lypd6,LOC107683855,LOC107725222,LOC107658220)


Basic Information

Item Value
gene id lypd6
gene name lypd6,LOC107683855,LOC107725222,LOC107658220
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13736548 ~ 13756253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248134.1
GTCTCATCCGCCTTTTAGGAACCTTTGAGTTCACAGGGATTCAGCTCGGACGTGTCATGGGTACAGACAACTGAAAGGACACTATTGATATACATGACTCTCTTCGGTTCCTGCCATACAGGGATAAATCTGGCGTGCTAAAAGTTTGACCACAGTGGTTTGTATCATTTTCGgTACCGTGCTGGATCTGGGTACCTGCTCATGTGAGTTTTCCTCCAGCTATGGAACCCTGGCCTCTCATGGCCTGGGGCCTGATGCTGACCGCCATCATCAAAGCGGTTCAATCGAGGGACTTCACAgaaaaagacattatttttcTACATCCCTCAACAACTCCATATCCAGGaggatttaaatgttttacctgTGAAGATGCACCTGACAACTATGAATGCAACCGCTGGGCTCCAGATCTCTACTGTCCACGAGAGAGCAGATATTGCTACACGCAACATAAGATGAGCTGGGATGGAAACACAGAGTCGGTGACAAAGCGTTGCGTGGCGCTGGAAGACTGTCTGGAAACAGGGTGCTCTGAGATAAACCATGAAGGAAACAAGGTGTGCACATCCTGTTGTGAGGGGAACATCTGCAACTTGCCCCTCCCACGAAACGAGACCGATGCCATCTTTGCCACCACGTCTCCTATTAACAACAGCGTTGAACCAGCACAGAGTCCCATGCTGCTGCTCTCTGTCTGTATCATCAGCCTGATGCTCCACAGTATTAACTGAGACAATCATCCAGAGCGGAATAAACCCTAATAGCAGTCATTTAGGAAACCACTGACTCATGCCAGTCAGCTGAGGGCTTTGCTTTTTCTCAGAATGAAGTGTTAGTTCTTGGACTTTTTATgtcatttgaatacatttttatgaatcgTATACTAATGTGTGGTTTCGCTCAAGCTAAGTGGACTTGTCTAATAGTCATGTTTTCGTGATGGATGTGGGATGGGGATATTTATGGCAAAACTGACACAAACCtgcacattttttgtttcaaaagtgaGTCGTGTTTTCTACATTtgtatagatatatttatttttttatcatccaTTTTTGTTGGAAGCTGAACTGTGGGCATGAGCAAAATTGTAGGGGTCAAGCTACATGAGTTTTCCAGCCACCCCTCTCATTGTGAGGGTATTTTTGTCATCATGGAAAAGGGCTTGGCACCTATAGGAACCAGCATTCCTCACTCCTATAAAAAGAACATTCTCTGTTAGTTTTGCACTGTGTATTTGTGTCATAATGCAACATGTATTCCTAAAGCACTTGTGTACAGATTGTCATGTGAAAGCGTAGTGACTAGCATTGAAAGTGCGTATAGCCTACAGCGAAGggctttaatattattattattattatatatgtatgtatgtatgtatgttccTACATATTTGTCGGTCCATTGTTGTGTACTGTAATATTTCCTAATCATGATTCTTGGCTGACTGTGCAATCAGCAAAAAAGTGTTGAGTCTGCAGCgacagtgttattttttttcaggcgTTATAATTTGTTTAGGCGACGTGCCCGGCTGTAAATGAAGCTATTTCCTGTTTCTTCTCCATCGTTCGTTGAGTTATACGAAAAGTACCgtaacattaactgaaatcatTTTGTTCACTTCGGTAGAAAATAAAGGGCATGGTGATCACAGAAGGGCTTCAAACCTTTACTCAGGTAATTATGGACCAACTAGTGCCAGTTTAGAAATACCCAAAACACCTTTATCCTGAGAAGACCCGGCCGAACCATCTGAGGTCTTATGCATTAAACACGTCTCTGAATGTGCTGATGTAAAATCAGCTCTCATTAGCTCAGATTGATAACATTgtgtacataaaatgtttttaaaatccgTTTTTACTCtcatctttaatatatataaaaataatacagatttgTAATAGGGCTGCATGAACTTTTTATACTTACAAAATTGTGAATGCTGCATGCCATCGTGTGCCAAGGCTTCTtataaatgtagatatttttttctacGCTTGTTTGTAATATCCCTGTATATTCTTGTGTACATAATTTTGGATATGATTTTAAATCACACCTTTTGGAGTACACTGGTAACACTCGTGCGGTCTCTTACCTGTGTTGTAtgcattcaatttaaatgtttactgaTGTCTTGTTTACtgataataaaagcaatatctTGAAGAA

Function

symbol description
lypd6 Predicted to enable acetylcholine receptor inhibitor activity. Acts upstream of or within Spemann organizer formation and regulation of Wnt signaling pathway. Located in plasma membrane. Is anchored component of plasma membrane. Is expressed in several structures, including DEL; hypoblast; margin; nervous system; and optic vesicle. Orthologous to human LYPD6 (LY6/PLAUR domain containing 6).

NR:

description
PREDICTED: ly6/PLAUR domain-containing protein 6-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248134.1 True 2188 mRNA 0.40 5 13736548 13756253

Neighbor

gene id symbol gene type direction distance location
lypd6b lypd6b,LOC107725258,LOC107658295,LOC107683936,LOC107723697,LOC107555360 coding upstream 7730 13713771 ~ 13728818 (+)
kif5c kif5c,LOC107723658,LOC107684119,LOC107555329,LOC108425929,LOC108266089 coding upstream 23226 13695803 ~ 13713322 (+)
acmsd acmsd,LOC107723660,LOC107555338,LOC107725255,LOC107555032 coding upstream 60605 13671667 ~ 13675943 (+)
arl4cb arl4cb,arl4c,LOC107658299 coding upstream 110405 13624476 ~ 13626143 (+)
sh3bp4 sh3bp4,LOC107684539,LOC107555364,LOC107723680,LOC107658300,LOC107555062 coding upstream 113753 13609427 ~ 13622795 (+)
rnd3b rnd3,rnd3b,LOC107725257,LOC107555359,LOC107723687,LOC107683601,LOC107658293 coding downstream 15983 13772236 ~ 13777201 (+)
si:dkey-91i10.2 LOC107555352,LOC107723691,LOC107682829,LOC107555050,LOC107725250 coding downstream 39986 13796239 ~ 13820693 (+)
arl5a arl5a,LOC107555355 coding downstream 68165 13824418 ~ 13835079 (+)
neb neb,LOC107725229,LOC107658288,LOC107555350,LOC107678501 coding downstream 84879 13841132 ~ 13895356 (+)
crygm3 crygm3,LOC107555346,LOC107723665,LOC107705175,LOC107658283,LOC107555044,LOC107670564 coding downstream 341876 14098129 ~ 14100450 (+)
G70032 NA non-coding upstream 44061 13692214 ~ 13692487 (+)
LOC122351436 LOC107555330 non-coding upstream 47515 13686665 ~ 13689033 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding upstream 50082 13685796 ~ 13686466 (+)
G70021 NA non-coding upstream 67104 13669106 ~ 13669444 (+)
G69985 NA non-coding upstream 218311 13515689 ~ 13518237 (+)
G70043 NA non-coding downstream 12976 13769229 ~ 13769429 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding downstream 21379 13777632 ~ 13787121 (+)
G70064 NA non-coding downstream 175366 13931619 ~ 13939730 (+)
G70069 LOC107555327,LOC107723673,LOC107658285,LOC107673585,LOC107729410 non-coding downstream 192500 13948753 ~ 14471817 (+)
LOC122352011 NA non-coding downstream 550294 14306547 ~ 14329484 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 51713 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 431957 13289693 ~ 13304591 (+)
G69755 NA other upstream 750570 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 933140 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1107013 12627535 ~ 12629535 (+)
LOC122351767 NA other downstream 830829 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1644874 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1951948 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1978317 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 2143174 15899427 ~ 15901720 (+)

Expression


Co-expression Network