spc25 (spc25,LOC107707602,LOC107564152,LOC107677909,LOC107708316,LOC107674771,LOC107566753)


Basic Information

Item Value
gene id spc25
gene name spc25,LOC107707602,LOC107564152,LOC107677909,LOC107708316,LOC107674771,LOC107566753
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24529672 ~ 24533048 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248138.1
GCAAAGTTCATGCCATACCgctattttgtagtttttaatctGACGCCACTTCCTGCGTAACCGCTGACGTTCCGGGCGcggatttttaaaaacaacgaGAATAAATTGCGTTTATTTTAACGCTATAAAACGGCTCAGTATGGCGTCCATCAGAGACTATAATGTGGTGGAGCAGTTTAACAGCAGACTGGAGGAGATCAGGGCTAAACTGCTGGATCAGGCCATGGGAGAGACACTCAATGACAGGGTGGCAGAGCTCTGTCAGGAACACAGGCAGTACATGAAGTCTGTCTTGGGTActtgttttaagaaatgcaaGGAGGACGAAACCATTTTTGACATGATAAAGACGTACAAAGAAGatttgaaAGAGAAAACATCTTCACTGAAAGAGAAAAGCGCCGAACATCTTGAGGTTGTGTCTGAGATCGAAGACAAAGAGCATCACAAAGCGCTTTTATTCCAGAGGATTGAGAAGCTCAAGAAGGATCAGGCCAAAAACAGGGACCtGATTCAGTCACAAAATAAAGCCAACAAGGACAGACTGAAGAAGCTGAACAAATGTAAAGACATCTTTCAGAAGCACCTCAGTCTTGAGATCAGAAAAACCCAAGGCGAGAAGCTGCAGTTTGTCTTCAGGAACGTCAGTCATAAAGATCCAGACATGGTCCACACCTTCCTCCTGCAGCTCGACGCAGAGGGCGTTTACCACATCATCTCCTGTGACCCTCCTCTGGAGAAAATGGCACATCTAGAGCGCAGACTGCAGGAGACCAACAACTTCTCTGCTTTTCTTGCTAACATCCGGAGAGAGTTTGTGGCGCTTCACAGCTGTGTAAAGACAGCctgattgtctttttttttttttttttttttttttattattattatttttttcatttcaaatgcatttaaaacaaacagtcAGAAACCCAGACGCCATATTTACAGACATTATCAGCACATAAATCGATCTTTTATTTACCTAAACCATCGGTAGTTACtcaatatgaaatatgtaatCGTTTCAGTTCttaatttttaacagtaaaCCTTTTATACAAGTCATAAAAAAACTCTTAAAGTGCTTTACAATTTCTTAGTTTTATACTACAGTGTCTAAAACGTATGCGTTTCATTACGTAAATTtctttttcacaataaaattcTAACAGTGGATTTCATTTGTAGACCTCCtttcatgaaataaaaccaaaacgcACA
>XM_043248139.1
GGTTTCCTGCTAAACTGAATTACTATGGCGTCCATCAGAGACTATAATGTGGTGGAGCAGTTTAACAGCAGACTGGAGGAGATCAGGGCTAAACTGCTGGATCAGGCCATGGGAGAGACACTCAATGACAGGGTGGCAGAGCTCTGTCAGGAACACAGGCAGTACATGAAGTCTGTCTTGGGTActtgttttaagaaatgcaaGGAGGACGAAACCATTTTTGACATGATAAAGACGTACAAAGAAGatttgaaAGAGAAAACATCTTCACTGAAAGAGAAAAGCGCCGAACATCTTGAGGTTGTGTCTGAGATCGAAGACAAAGAGCATCACAAAGCGCTTTTATTCCAGAGGATTGAGAAGCTCAAGAAGGATCAGGCCAAAAACAGGGACCtGATTCAGTCACAAAATAAAGCCAACAAGGACAGACTGAAGAAGCTGAACAAATGTAAAGACATCTTTCAGAAGCACCTCAGTCTTGAGATCAGAAAAACCCAAGGCGAGAAGCTGCAGTTTGTCTTCAGGAACGTCAGTCATAAAGATCCAGACATGGTCCACACCTTCCTCCTGCAGCTCGACGCAGAGGGCGTTTACCACATCATCTCCTGTGACCCTCCTCTGGAGAAAATGGCACATCTAGAGCGCAGACTGCAGGAGACCAACAACTTCTCTGCTTTTCTTGCTAACATCCGGAGAGAGTTTGTGGCGCTTCACAGCTGTGTAAAGACAGCctgattgtctttttttttttttttttttttttttattattattatttttttcatttcaaatgcatttaaaacaaacagtcAGAAACCCAGACGCCATATTTACAGACATTATCAGCACATAAATCGATCTTTTATTTACCTAAACCATCGGTAGTTACtcaatatgaaatatgtaatCGTTTCAGTTCttaatttttaacagtaaaCCTTTTATACAAGTCATAAAAAAACTCTTAAAGTGCTTTACAATTTCTTAGTTTTATACTACAGTGTCTAAAACGTATGCGTTTCATTACGTAAATTtctttttcacaataaaattcTAACAGTGGATTTCATTTGTAGACCTCCtttcatgaaataaaaccaaaacgcACA

Function

symbol description
spc25 Predicted to be involved in chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC25 (SPC25 component of NDC80 kinetochore complex).

NR:

description
kinetochore protein Spc25 isoform X2

GO: NA

KEGG:

id description
K11550 SPBC25, SPC25; kinetochore protein Spc25, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248138.1 True 1224 mRNA 0.40 7 24529672 24533048
XM_043248139.1 False 1109 mRNA 0.39 7 24529672 24532778

Neighbor

gene id symbol gene type direction distance location
stk39 stk39,LOC107707604,LOC107708317,LOC107558608 coding downstream 47585 24425526 ~ 24482087 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915,LOC107755203,LOC107677900 coding downstream 335870 24142666 ~ 24193802 (-)
slc38a11 slc38a11,LOC107674763,LOC107677901 coding downstream 491542 24029509 ~ 24038130 (-)
cobll1b cobll1,LOC107674769,LOC107755205 coding downstream 500558 23981970 ~ 24029114 (-)
LOC122351750 igfbp2b,LOC107601376,LOC107719878,LOC107656525,LOC107739679,LOC107688948,LOC107567301 coding downstream 611020 23914681 ~ 23918652 (-)
abcb11a abcb11a,LOC107677906,LOC107674755,LOC107564151,LOC106581787,LOC107744834 coding upstream 829 24533877 ~ 24558743 (-)
lrp2a lrp2a,lrp2 coding upstream 38814 24571862 ~ 24667167 (-)
fastkd1 NA coding upstream 184562 24717610 ~ 24727730 (-)
ccdc173 ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830 coding upstream 195320 24728368 ~ 24733782 (-)
mettl5 mettl5,LOC107744838,LOC107739664 coding upstream 221840 24754888 ~ 24758657 (-)
G73077 NA non-coding downstream 8364 24513094 ~ 24521308 (-)
G72980 NA non-coding downstream 243982 24253362 ~ 24285690 (-)
G72984 NA non-coding downstream 245507 24281991 ~ 24284165 (-)
G72929 NA non-coding downstream 548434 23926223 ~ 23981238 (-)
G72927 NA non-coding downstream 615786 23912173 ~ 23913886 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding upstream 31833 24564881 ~ 24571112 (-)
G73160 NA non-coding upstream 206278 24739326 ~ 24745938 (-)
G73175 NA non-coding upstream 243112 24776160 ~ 24778655 (-)
G73179 NA non-coding upstream 267990 24801038 ~ 24801377 (-)
LOC122351686 NA non-coding upstream 279268 24812316 ~ 24821062 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 248964 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 569347 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 598343 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2018365 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2306005 22171463 ~ 22223667 (-)
G73201 NA other upstream 494537 25027585 ~ 25030965 (-)
G73301 NA other upstream 815730 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 923366 25456414 ~ 25458742 (-)
G73347 NA other upstream 1257469 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 1261035 25794083 ~ 25853303 (-)

Expression


Co-expression Network