cmss1 (cmss1)


Basic Information

Item Value
gene id cmss1
gene name cmss1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10285026 ~ 10289515 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248140.1
ttttttgtcggTAGATTCGCGAGGTTTTCTATCCAGGCGAATCTGCCGTGCGCAAACTCCAGGCACGCGATTGCGGTTTGAGACATGGCTGATGATTTGGGAGACGAGTGGTGGACCCAAGGCGACAATTCAGGTGTGTCAGGGGTAGAGGAGAACATACAGCCACCTGCAGAAGAACAACCGCAGAAACCTATATCAAAGAAAAGGAAGGGTGAAAACCAGGATCAGGACAACaccaagaaaaagaagaggaagaaaactGTTAAGAAAGAATGTTTCATCACACAGGAGAGATCAGAGGAAACGGGTGATAAGGGGTCcaacaaaaacaagaagagAAGAAAGaagaagaaaactaTCACAGATGTGCTGACAAACTCTGAGCCTGTGCCTGGCTCTCCAGCTGACCTTTTGAGCCTTTTGAAGAGTCACCATAGCCAGACGCGCTCTGTCATCGAGCAGGAGGAACTGATGCTAAGCGAGTCTTGTTTCCTGCGCTGTAACGACCTTACACATAGCTTGTCTTCCTACCTCAAAGAAGtttgtcCAAAGTGGGCAAAAATACAGAAGCAGCACAGCCAGACCCGGTCAGTGGTGTTGCTCATCGTTTGCGAATCTGCTTTAAGGGCGATTGATGTCATTAAGCAGCTCATAGTGTTCAAAGGACAAGCTAAAGTGCTGAAGCTGTTCGCAAAGCACATCAAGGTGGATGAACAGATCAAGTTACTGAGTAAAGGTGTGACCCATATTGCTGTTGGAACTCCTGGGAGAATATGTGCCCTGTTAGAGAAAGAGGGTTTAACTACACAAGGACTAAAATATCTGGTTCTGGACTGGAACCACCGAGACCAGAAACATAGGAGAATGGTGGATATTCCAGAGgTGAAAGGAGACTTGCTGAAAATGTTGGACCATGGTCTAATTCAGAGCTGCAAGGCTGGAACAGTTAAAATAGGACTCTTTTAAACAGATGCTCtctattatttaaacaaacagccGTGTTCATTTACTGTTCGTTTACTTGTCTGCTGCAAGATCAAAACATGTGGTGTGTGattgttttttatgattataaataaaaaacaagtcGGATTGGTCAAAAA

Function

symbol description
cmss1 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

NR:

description
PREDICTED: protein CMSS1 isoform X1

GO: NA

KEGG:

id description
K14784 CMS1; protein CMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248140.1 True 1103 mRNA 0.44 9 10285026 10289515

Neighbor

gene id symbol gene type direction distance location
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding downstream 404 10278858 ~ 10284622 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding downstream 37534 10239297 ~ 10247492 (-)
jagn1a jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576 coding downstream 47062 10236298 ~ 10237964 (-)
tfg tfg,LOC107655517,LOC107720125,LOC107748203 coding downstream 49355 10226387 ~ 10235671 (-)
rpgra LOC107555232,LOC107663889 coding downstream 125020 10149875 ~ 10160006 (-)
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding upstream 119244 10408759 ~ 10411514 (-)
rnaseh2b rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411 coding upstream 126741 10416256 ~ 10419386 (-)
LOC122351939 LOC107720137 coding upstream 157465 10446980 ~ 10462522 (-)
LOC122351938 LOC107720137,LOC107655483 coding upstream 157868 10447383 ~ 10454136 (-)
mcf2lb LOC107663886,LOC107555216,LOC107720127,LOC107655510,LOC569231 coding upstream 173480 10462995 ~ 10479085 (-)
LOC122351639 NA non-coding downstream 21579 10253933 ~ 10263447 (-)
G69157 NA non-coding downstream 42814 10117793 ~ 10242212 (-)
G69168 NA non-coding downstream 146267 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 174783 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 198004 10085433 ~ 10087022 (-)
G69223 NA non-coding upstream 136712 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 154778 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 155762 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 547997 10837512 ~ 10844040 (-)
LOC122352018 NA non-coding upstream 560308 10849823 ~ 10908594 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 374848 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2190179 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2260354 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3131072 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 4023957 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 143992 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 225757 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 390643 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 1107151 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1207432 11496947 ~ 11500495 (-)

Expression


Co-expression Network