rbm44 (LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772)


Basic Information

Item Value
gene id rbm44
gene name LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13961757 ~ 13972062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248143.1
TTTCAGTCACAAGTCGTCAGCAACTAATAACATCTCTGTGAGCGTTAAAACTGGCTGGTTAAAATCGTCgggttaaaaacaacacaaatgagAGTAATTGTTTACTCTTCGTGTGGCATTTTCATGTAAATTGCACGCGTAGCTGGTgccagtttattaataaatcgcTCAGCTGCAGCGCCTAACGTTACACATTAACAACAGGGCGCTTACCTGAGGTGGACAGGCCCTGTTTCTAGTTTTGTCATCGATGATAACTGTTGCGAAAATATTCTAAAGGTCCCTTTTTCTTGAATGTGGTCGAACATGTGGTACCCTCAACCTCTCGTCGTACCGTTACCGTTCGTCTTTGAGTCATATTCAGTAACATATGAGGATGTTTCTGCCAGAGCCACGAGGCCAGTCATTCAACCTGACCAACGCGCGTATACTGCAGTGAACGAGAATAATGGCTTTTACAATGGTCCCCTGTACACCCATGATGAAAGGAGATTTGTGTTGATGAGGTCACTGTTCGAGCTCGTCTTGGCCAATGAATACCTGGAGCTCACAGATACAAAGTTTCTTAGATGGTTTCTGTGTTTAACAGCAGATGAcagaactttaattaaaaAAGAGGGAGGGCTTCAGCCATTTTTACAGAAACACCCGTTACTTCAAGTAGACAGACAGCATGTTTATGTGAAAGGTACAGTTTACAGAGGCAACTGCATTCCTCCTGCAACAACCATGTCATCAAATAAGTACCCATCATTTTATGGTGCATGCCAGTGTCAGAATTGTGCAACGATTTGTCCACTTGGTTCTAAGAAGTGCAGAAGTTGTGGCTTTCACATTGAGATTTCAGAAGACAAAGTCTGTGTGCCAGAGAATGAGAAACAACTTGAGCTGCTACCAAACTCTGTGAAAGAGGAGCTGAACATCTCAACTGCCCGAAGTGACACAACTGTTGGTTACACGCAGAGCACTTTTAATACTCAGAAAACAAGATGCACGCAGAGCTATGATTATGGAGGCCCTGTTGCACATTCTCCTTCATGCAGTAAAGGGATGTGTCCTCATGCCCAGTGCCTGTCTGAGTTGTGGGAGGAAGTAAAGAAGAGGGAGGACACCAAACACTTCAAGGACACAACAACCCAGGCAAATTTCTCCCTCGATACGGAGTTGGACATGCAGATTCAGGTTCAGATGAATGACTATACCCAAAATTGCCAAGACCAATCTTATGTACAAGTGAAAAAAGCTGATTACTACAATCTGGATCAAGAAGCAATGGcagaatattacagttttagtGACACTAGCTTAGACCATACAGAATGGAGCGTTGGCACTCGGAGTATGGAGGCAGCCTACAATGATTCAGTCATGGCCACCAAAGGCAGTACAGAACTATCAGATGAACCATCAAATGCCACCATGGCCACTGCTGCAAACTCTGATTGCTTCTCTTGCCTTGGCAGTTCTTTTGAGCTGGAAAATGAGTCAGGAGACCATCAAGAAGACATGAGAAAGAAGCGTGAACCAGTATATGAGCAGCAGACTGAGGAGATCAATGTTGGACCTTCACTGAAATCCAAATGTGGTGCTTCAGTTTCTGTGGACCAGATAATAGATGCCTGTGGTGATTTTAGAAGCTGTTTCACATCTACATGTGCAACCGAGGTTGTTCAGATCttccaaatgaaaaatgttgccACTGATACAGACTTGCTAGCTGTCGGTCATGagaaaaatacacagactgtACAAATTGCCACATCTGAAAAGAACACCATTACTGAAGTCTGCATGTCTGATTTAGATGTCCTCACAGAGGAATTTATAAATCTAAAGGAGACAGCGAATGAGCAACTGAAGAGCAGGAAGGCAGAAAgTCCTGGTGGAGGTCACTGCAGGAGAGTTTGTGGAAGTGACTGTGCCCAGCGAGTGAGAAGAGCAGAGCTGCGTCTTCTCGCTCTTCAGTTTGTCATGTGTCAGCAGCACTGCTGGAGACGCTACTTAACCTCCCCACTGGGTGAAAGTGCTCTTTGGGGGACCGACGGCCTGCCAGGTGGTGTAGCAGAAACACTTAATACACTACAGAAAGATTACTATGAGATGAGGAAACAGATTCTAGCAGGCACTCCTCTAGATAACCTTAAGCCCCTGTCAGTAGACTCTGACAAGATAACTACAAGGCCAAACTACAGCCCAGCGCTGGTGCTTGAGGCCCATTTAAACTCATTTGACTGTTCAGGAAGaaCCATTGCAAGTGGCCACCGAGTGGATGATGAAAACAAAGAGAGGGCACTGAGCACTGAAGTTTGTCAGGACACTGAAGCTGCTTTGGATGACACAGAAGGTGATGGCAACGAGCAAGATAGAGCTCTGGTCTTTTCCACCAAGTCTCCGGGAGCTTTTCAGAAGAACCCTGGTGTCATCAAGGATCCGAACAGCAGTGAGGCTTGGTTTGATGCCGAAGAGGAACTTAGGTCTCTATATCTGGATGGAAAAATGGAGAAACTGAATGAAAGCAAAGAAAGGACTGATGAAGATGAATCAAACCACAGTTCCCTCTTGTGCATTACAAGCTTGCCTGGCAGTATCACTGAGCATGAAGTGCTGCTTTGGTTTGATAAGTACAATGCCACCAATGTCTGCATCTCTACTTTCAGCAACAATATGAGAGCAGCTATTGTTTATCTCAAGAGCCCTAGCGACGCCAAGGCAGCAGCTAAAGACCTACAGGGGTGCTCCCTCCAAGGCCACACTATTCAGGTGGTGCAGCTTCATGGGCCTGCCTCAGCTTATCCTAAACTGATCAGTGATCAGCCCCACAGCACCTCAAAAACCCATAAAAAAGAACCTGACGGCGATGGACTGAAAGGGAAGGGTTTAACCTACAGTTCTTCACGTGGAGGGCCGCGCTGCAGTGTGGACAGGTTAACCAATGTCTGCGACTCGCCCACAGCCTCTGGCACCTGCATGCCAAAGCACTACGCCACCATGGGAAGCTTTGAGACAATCATGGCCCAGCTGTCGGAGCGCCACCCAAACGTAGGCCGCCAGAGGATCGTTGATGCCCTCCTGGAACTGCGGGCCAAGCATCAGGGCTTCCTCTGTGGGCTTCCTTTGAGATCTATAGTGGAAATGACTTCTGAGCTTCTAACACAGGCGTCTGCTCCGACATATATTTGAGTTGGTACTAAGCAGCAGTAAAGGCCTTATAAATAGTTCCCTGACCAGTATGACTggatttcagttcagtttcagttcagttttttccAACTAACTAATGCTATCTACAGCCATTTcgttttaattcattaatcagcACTTCTTTCTCCtggaaatgttattttggaTTCTTTTTAGGTTTTCATCATTGCTGTTATCAGTTATGCTAAGTGCATATGAAAGTTTCCTTGTGTTTGCCGAATAAAACTTCATGTTCCTGTGTTTCCTGTAATGATTTGATGAGTGCAAGCCCAGGCGCAGTGTAGAGCTGCACATTTCAAATGCGTCT
>XM_043248144.1
TTTCAGTCACAAGTCGTCAGCAACTAATAACATCTCTGTGAGCGTTAAAACTGGCTGGTTAAAATCGTCgggttaaaaacaacacaaatgagAGTAATTGTTTACTCTTCGTGTGGCATTTTCATGTAAATTGCACGCGTAGCTGGTgccagtttattaataaatcgcTCAGCTGCAGCGCCTAACGTTACACATTAACAACAGGGCGCTTACCTGAGGTGGACAGGCCCTGTTTCTAGTTTTGTCATCGATGATAACTGTTGCGAAAATATTCTAAAGGTCCCTTTTTCTTGAATGTGGTCGAACATGTGGTACCCTCAACCTCTCGTCGTACCGTTACCGTTCGTCTTTGAGTCATATTCAGTAACATATGAGGATGTTTCTGCCAGAGCCACGAGGCCAGTCATTCAACCTGACCAACGCGCGTATACTGCAGTGAACGAGAATAATGGCTTTTACAATGGTCCCCTGTACACCCATGATGAAAGGAGATTTGTGTTGATGAGGTCACTGTTCGAGCTCGTCTTGGCCAATGAATACCTGGAGCTCACAGATACAAAGTTTCTTAGATGGTTTCTGTGTTTAACAGCAGATGAcagaactttaattaaaaAAGAGGGAGGGCTTCAGCCATTTTTACAGAAACACCCGTTACTTCAAGTAGACAGACAGCATGTTTATGTGAAAGTTTACAGAGGCAACTGCATTCCTCCTGCAACAACCATGTCATCAAATAAGTACCCATCATTTTATGGTGCATGCCAGTGTCAGAATTGTGCAACGATTTGTCCACTTGGTTCTAAGAAGTGCAGAAGTTGTGGCTTTCACATTGAGATTTCAGAAGACAAAGTCTGTGTGCCAGAGAATGAGAAACAACTTGAGCTGCTACCAAACTCTGTGAAAGAGGAGCTGAACATCTCAACTGCCCGAAGTGACACAACTGTTGGTTACACGCAGAGCACTTTTAATACTCAGAAAACAAGATGCACGCAGAGCTATGATTATGGAGGCCCTGTTGCACATTCTCCTTCATGCAGTAAAGGGATGTGTCCTCATGCCCAGTGCCTGTCTGAGTTGTGGGAGGAAGTAAAGAAGAGGGAGGACACCAAACACTTCAAGGACACAACAACCCAGGCAAATTTCTCCCTCGATACGGAGTTGGACATGCAGATTCAGGTTCAGATGAATGACTATACCCAAAATTGCCAAGACCAATCTTATGTACAAGTGAAAAAAGCTGATTACTACAATCTGGATCAAGAAGCAATGGcagaatattacagttttagtGACACTAGCTTAGACCATACAGAATGGAGCGTTGGCACTCGGAGTATGGAGGCAGCCTACAATGATTCAGTCATGGCCACCAAAGGCAGTACAGAACTATCAGATGAACCATCAAATGCCACCATGGCCACTGCTGCAAACTCTGATTGCTTCTCTTGCCTTGGCAGTTCTTTTGAGCTGGAAAATGAGTCAGGAGACCATCAAGAAGACATGAGAAAGAAGCGTGAACCAGTATATGAGCAGCAGACTGAGGAGATCAATGTTGGACCTTCACTGAAATCCAAATGTGGTGCTTCAGTTTCTGTGGACCAGATAATAGATGCCTGTGGTGATTTTAGAAGCTGTTTCACATCTACATGTGCAACCGAGGTTGTTCAGATCttccaaatgaaaaatgttgccACTGATACAGACTTGCTAGCTGTCGGTCATGagaaaaatacacagactgtACAAATTGCCACATCTGAAAAGAACACCATTACTGAAGTCTGCATGTCTGATTTAGATGTCCTCACAGAGGAATTTATAAATCTAAAGGAGACAGCGAATGAGCAACTGAAGAGCAGGAAGGCAGAAAgTCCTGGTGGAGGTCACTGCAGGAGAGTTTGTGGAAGTGACTGTGCCCAGCGAGTGAGAAGAGCAGAGCTGCGTCTTCTCGCTCTTCAGTTTGTCATGTGTCAGCAGCACTGCTGGAGACGCTACTTAACCTCCCCACTGGGTGAAAGTGCTCTTTGGGGGACCGACGGCCTGCCAGGTGGTGTAGCAGAAACACTTAATACACTACAGAAAGATTACTATGAGATGAGGAAACAGATTCTAGCAGGCACTCCTCTAGATAACCTTAAGCCCCTGTCAGTAGACTCTGACAAGATAACTACAAGGCCAAACTACAGCCCAGCGCTGGTGCTTGAGGCCCATTTAAACTCATTTGACTGTTCAGGAAGaaCCATTGCAAGTGGCCACCGAGTGGATGATGAAAACAAAGAGAGGGCACTGAGCACTGAAGTTTGTCAGGACACTGAAGCTGCTTTGGATGACACAGAAGGTGATGGCAACGAGCAAGATAGAGCTCTGGTCTTTTCCACCAAGTCTCCGGGAGCTTTTCAGAAGAACCCTGGTGTCATCAAGGATCCGAACAGCAGTGAGGCTTGGTTTGATGCCGAAGAGGAACTTAGGTCTCTATATCTGGATGGAAAAATGGAGAAACTGAATGAAAGCAAAGAAAGGACTGATGAAGATGAATCAAACCACAGTTCCCTCTTGTGCATTACAAGCTTGCCTGGCAGTATCACTGAGCATGAAGTGCTGCTTTGGTTTGATAAGTACAATGCCACCAATGTCTGCATCTCTACTTTCAGCAACAATATGAGAGCAGCTATTGTTTATCTCAAGAGCCCTAGCGACGCCAAGGCAGCAGCTAAAGACCTACAGGGGTGCTCCCTCCAAGGCCACACTATTCAGGTGGTGCAGCTTCATGGGCCTGCCTCAGCTTATCCTAAACTGATCAGTGATCAGCCCCACAGCACCTCAAAAACCCATAAAAAAGAACCTGACGGCGATGGACTGAAAGGGAAGGGTTTAACCTACAGTTCTTCACGTGGAGGGCCGCGCTGCAGTGTGGACAGGTTAACCAATGTCTGCGACTCGCCCACAGCCTCTGGCACCTGCATGCCAAAGCACTACGCCACCATGGGAAGCTTTGAGACAATCATGGCCCAGCTGTCGGAGCGCCACCCAAACGTAGGCCGCCAGAGGATCGTTGATGCCCTCCTGGAACTGCGGGCCAAGCATCAGGGCTTCCTCTGTGGGCTTCCTTTGAGATCTATAGTGGAAATGACTTCTGAGCTTCTAACACAGGCGTCTGCTCCGACATATATTTGAGTTGGTACTAAGCAGCAGTAAAGGCCTTATAAATAGTTCCCTGACCAGTATGACTggatttcagttcagtttcagttcagttttttccAACTAACTAATGCTATCTACAGCCATTTcgttttaattcattaatcagcACTTCTTTCTCCtggaaatgttattttggaTTCTTTTTAGGTTTTCATCATTGCTGTTATCAGTTATGCTAAGTGCATATGAAAGTTTCCTTGTGTTTGCCGAATAAAACTTCATGTTCCTGTGTTTCCTGTAATGATTTGATGAGTGCAAGCCCAGGCGCAGTGTAGAGCTGCACATTTCAAATGCGTCT

Function

NR:

description
PREDICTED: RNA-binding protein 44-like isoform X3

GO: NA

KEGG:

id description
K25080 RBM44; RNA-binding protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248143.1 True 3508 mRNA 0.45 18 13961757 13972062
XM_043248144.1 False 3502 mRNA 0.45 18 13961757 13972062

Neighbor

gene id symbol gene type direction distance location
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding downstream 660 13925913 ~ 13961097 (-)
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding downstream 40160 13913874 ~ 13921597 (-)
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding downstream 137972 13821399 ~ 13823785 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 174629 13783785 ~ 13787128 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding downstream 178305 13777626 ~ 13783452 (-)
etv5a etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585 coding upstream 1985 13974047 ~ 13985162 (-)
LOC122351370 LOC107723674,LOC107672245,LOC107555347,LOC567728,LOC107555039,LOC107658284,LOC107729411 coding upstream 12953 13985015 ~ 14086771 (-)
crygs3 crygs3,LOC107555333,LOC107658281,LOC107705159,LOC107723661,LOC107686303 coding upstream 120865 14092927 ~ 14093892 (-)
crygs4 crygs4,LOC107723662,LOC107555042,LOC107669732,LOC107658282,LOC107705158 coding upstream 124813 14096875 ~ 14097614 (-)
LOC122352116 LOC107568713,LOC107555340,LOC107555339,LOC107555341,LOC107664838,LOC107705172 coding upstream 199727 14171789 ~ 14172518 (-)
G70309 NA non-coding downstream 36921 13924616 ~ 13924836 (-)
G70308 NA non-coding downstream 37653 13923749 ~ 13924104 (-)
G70306 NA non-coding downstream 83345 13878124 ~ 13878412 (-)
G70305 LOC107725229,LOC107658288 non-coding downstream 85291 13873518 ~ 13876466 (-)
G70303 NA non-coding downstream 88746 13872706 ~ 13873011 (-)
LOC122352120 NA non-coding upstream 201755 14173817 ~ 14189001 (-)
G70332 LOC107724468 non-coding upstream 272225 14244287 ~ 14247328 (-)
G70382 NA non-coding upstream 505270 14477332 ~ 14562992 (-)
G70393 NA non-coding upstream 617796 14589858 ~ 14590275 (-)
G70396 NA non-coding upstream 622201 14594263 ~ 14595342 (-)
G70294 NA other downstream 21889 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 48814 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 148430 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 287950 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 466090 13473135 ~ 13495667 (-)
G70317 NA other upstream 224417 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 387584 14359646 ~ 14372674 (-)
G70549 NA other upstream 1331041 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 1417156 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1799359 15771421 ~ 15771864 (-)

Expression


Co-expression Network