sgo2 (LOC107724470,LOC107668892,LOC107568829)


Basic Information

Item Value
gene id sgo2
gene name LOC107724470,LOC107668892,LOC107568829
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14208147 ~ 14212935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248145.1
tttaataaattcaagGCATTTTTACTGGTCCGTCGAGGTTCTGTAAGGTTGTCCAATTACAGACTTCGTCCAGTAGATAGCGATACTTCAACACTTGATTCTGCGAACGCTTTTAAAAACGAGAGAAGAAGAATTTTAAGATTTCGCGGAAATGTTTGGTTTTAAATAAGTAGAAACCGACTTCATTTGTAAGCTCATCGTTTATTGTCTGcgtagaaatgcattttaacaagtATAAAGATAAACACCATCAAGAGTCGAGTTTGTCGTTATCTTTTATTAATGCTCCCAATGATAAAACGCTGACAGCGGCgtctaaagagaaaaaagaaaacataagaATGGGCAAACAGACGGCAGCTGTGTACGCAGCAAAGATAAAGACCAAAATACACAATACCTCATCATTCTTCAAGCTTTCTTTGAAAAGCAACAACAAGGCCCTGGCTCTGGCTCTTGTTGCTCAAAAGCAGAAGAGCAGAGAGCTGGAGGCAGAGGTGATGCGACTGAGGAAAGATGCGCAGTCAACTCATTTTGATCTTGCTCATCAGCgtcataaaaacaaagaacTGTTTGGCATTATACGAGAGGTTTATAATTCTTCCCTAAACTGGATGGCAAAGGCAGTTGACATTTTCTGTAATGATGAGgaTCCAGTCAGCATGGACTCAGAAGACAATGCCAGTGAAGaccAAATCATTGAAACGGGAGAGGTTGAGAGTTTGCGAGACAGACATTTGTGTCCACGGCAGGACCATGCTCATTCTGAACCGGTGAATTCAGCCAAGGATGCTCCCagccaagagagagaaaacaccaTATATGACTCTGAAATGGAGATGACCGTTAGTGACAGTGCTGCTGAAATAGTAACAGTTGAAACAAATCCCAGAAAAACCTCTACAGTTACAGAAGAACAGCATAAAAAGAAGGATTTGAGTCTATCGGAAAAAGGTAGTGAGGTTATATATGCAAATGAAGGCTCACCGATTGAATGTAGTAGATTAAAATATACAGCAGCTGTGCCAAAAGAGATAACCACTGTCACACAGCAGTGCTCTCCCAGTTTTCAGAGCGAGGTGGAGATCAGGCAGCAATTGGGATCAATAACTGCAAGGAGAAAGACTCATGTCACCGCTCATTGTAATAAAAGTAGCAGACGTACATGTAAACTGAAAGAACCAGATCCAAGAAAAACATATCTGATCTCCCAGGAACTTCCTAATGACATTTTTGATGATTGTTTCAGTGATTTCGAGCTTCTGAACTCTGAAAGAAGCAGGGCATTGCTTTcacatgaaaatatttcaaataaagctgCTAAAAGCAAAGCTAAAGAGTCCCATGCTACGCGGGAAACTAGAAGAACAATGATAGTTCAAGATGAGCTAAGACCTCAAAAGAGCAGGAAGACCAAAGTCTTGTCCCTTATGATGGAACACCGTTTATTGGATATGCATGAAAATGTTCAGTCTGCCAGTACTTTATGCCCAGAGACTGCTTGCACGGATGTCCGTGTCAGTGAGACTGTagttcaaaaacataaaaacaaaactccaGCACGCTCAAATTCTCAGTCTGGAGCGCCCCATGTGCAGAAAAACAGAGGAACATTTGTGATAAAGACAAATCAATTATTAATCAATGAggattcatttttgaatgaaaccaATATACTGGAAGATCCCAACAGACCGGAAGTAATATCAGAAACCCAAATGTCAGCTCTCCGTATTGGTTCAGATAATGTTGCACAACAGCACAAGGAGCCAGCGCATGGATTTCATGAGATATTGACAGAAAACGCCCATCATCCAGAATGTTCACAAGATGTGAACGGCAGCCTTGTACAGGAACCCTCTGAAATTATATCATCAGTGGCCGGTAAAgccaaaaaacacagaaaagaggggacagataaaataaaaaggaaaaattccGCACCAAGAGAAAAACCCAAAgcattaacaaagaaaaaaaacagttgtgttgtgAGTGTGGATGAAACGGTGTTGACTAAAAGGCAAGATGAGACTGATCTTCAGAATGGAGCAGGATGCAGGTCTTTGTCTAATACCTTACAGCTgccagtaatgtcttattgCTCAGCCTCAAAGGAAGACCTGACGGACACACATGATGCTGAAACCCTTGGAATAAATTCCCCTGCCTCTGCTGACGAGTTCGATCAGACTGACCATGTCAACGCGCACGTGAATCTGGATCAAATCAACCAGGCTCTTGAGGGCAGGTGCAGGAAAACATACGTTGTTTCATCTAGTCACGACTCACCCCTTAAGGAAAAGACAGACAGTGGTGCTTCCAGCGACATTTCTGAACGTGATCTTTTTTCTAGTGACACAGATAATGTTTCACCTGTAGTAAACAGAAGCATGTTTGTCATGGAAAAATACTATGTGTCTTCAGATGGTTTTAGTGGACACACAAAAGACCTTCAATTCACAGAAGAGAGGCCTCCCTGGGAGACCATTGACTGTTACACTGAAGCACTCTTAGATGAAAGTTCTGCCTACAGCCCTCAAGCAGAGAGTCGCTGTCAAACTTTGAACATTTACCAGGACCAGGACTCAGACATGAGTCACCAAGCACCAGAAGAAGGCAGGGTTATGAAGAGTCTAACAAATACAGAGTCTAACTCTGATTGCGGGAGAACACGAAGAAGAGCCGCACCAGTCTCCTACAAAGAGCCAACCCTCAACTGcaaaatgAGGCGAGGGGACAAATACTCGGATACAAAGTTCCTTAACTCTCCTGTgtttaaagacaaaaagaagaaaaaacgagTTTAGGAGTGACTTTCCCATTTATTGATTCCtttggtttttttacattttatttagttttatgtcttttttatgtaatgcagATGTTTAAGATGGGTTTTAAAGTTATCgtttttaatcaaaactgttaccttggcttttttttattcttatgtgtgtgtatagaaaatattgtttcaagttatatgtattttattggtTAATAAAGAGAACCTGctctattttcttttattgttg

Function

NR:

description
PREDICTED: shugoshin-like 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248145.1 True 3041 mRNA 0.41 8 14208147 14212935

Neighbor

gene id symbol gene type direction distance location
LOC122351400 LOC107568797,LOC107724467,LOC107682866 coding downstream 796 14205767 ~ 14207351 (-)
crygm7 crygm7,LOC107705168,LOC107597399,LOC107724483,LOC107568737,LOC107658272,LOC105899368 coding downstream 4659 14202785 ~ 14203488 (-)
si:dkey-57a22.14 LOC107724481,LOC107668873,LOC107597431,LOC107658270,LOC107705154,LOC107568754 coding downstream 6483 14200868 ~ 14201664 (-)
crygm6 crygm6,LOC107724479,LOC107568790,LOC107668857,LOC107658269,LOC107705155 coding downstream 8082 14199226 ~ 14200065 (-)
LOC122351901 si:dkey-57a22.15,LOC107668860,LOC107597434,LOC107724448,LOC107658273,LOC107568805,LOC107705156 coding downstream 10681 14196704 ~ 14197466 (-)
kctd12.1 kctd12.1,LOC107724452,LOC107668866,LOC107658214,LOC107705151,LOC107580341 coding upstream 62634 14275569 ~ 14277666 (-)
zgc:162944 zgc:162944,LOC107724454,LOC107597427,LOC107658212,LOC107705163,LOC108424409,LOC103034916,LOC108266838 coding upstream 70667 14283602 ~ 14285530 (-)
txndc9 txndc9,LOC107568936,LOC107724502,LOC107668903,LOC107658261,LOC107705160,LOC107597391 coding upstream 74352 14287287 ~ 14290228 (-)
rev1 rev1,LOC107658260,LOC107568994,LOC107668902 coding upstream 77914 14290849 ~ 14306284 (-)
sox1a sox1a,LOC107569013,LOC107668909,LOC107658211,LOC107597426,LOC107724510 coding upstream 125763 14338698 ~ 14340623 (-)
LOC122352120 NA non-coding downstream 19146 14173817 ~ 14189001 (-)
G70309 NA non-coding downstream 283311 13924616 ~ 13924836 (-)
G70308 NA non-coding downstream 284043 13923749 ~ 13924104 (-)
G70306 NA non-coding downstream 329735 13878124 ~ 13878412 (-)
G70305 LOC107725229,LOC107658288 non-coding downstream 331681 13873518 ~ 13876466 (-)
G70332 LOC107724468 non-coding upstream 31352 14244287 ~ 14247328 (-)
G70382 NA non-coding upstream 264397 14477332 ~ 14562992 (-)
G70393 NA non-coding upstream 376923 14589858 ~ 14590275 (-)
G70396 NA non-coding upstream 381328 14594263 ~ 14595342 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 703865 14916800 ~ 14918840 (-)
G70294 NA other downstream 268279 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 295204 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 394820 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 534340 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 712480 13473135 ~ 13495667 (-)
LOC122351495 NA other upstream 146711 14359646 ~ 14372674 (-)
G70549 NA other upstream 1090168 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 1176283 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1558486 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 2507869 16720804 ~ 16746222 (-)

Expression


Co-expression Network