med4 (med4,LOC107724027,LOC107673119,LOC107601074,LOC107709409,LOC107675337)


Basic Information

Item Value
gene id med4
gene name med4,LOC107724027,LOC107673119,LOC107601074,LOC107709409,LOC107675337
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12453126 ~ 12456128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248152.1
AGGCGTCGCTGTCTGACGCACGCTTCTGCTGGTTATTTTTCACGCATGCGCAAAGCGAGGAGAAACAGTCATGGCGACGGCGGCGGCGGCAGCGGAGAAACCGACGAAAGAGAAGCTTCTATCCACTCTGGATGACATTGAAGTTTTATCCAGAGAGCTGATAGAGATGCTGGCGCTGTCCAGGACTCAGAAGATGCCCCAGCCTGGAGAGGACACTGATATACTGGAGCTGTTAGTGCAGAGAGATAAAGAGTTTCAGGAGCTCATGCAGACGGCAGTGGAGCAGGGCAAAGTGCACGGGGAGATGCAGGCGCTGGAGAAGGAAGTGGAGAAGAGAGACAGCGACATCCAGCAGCTCCAGAAACAGCTCAAAGAGGCTGAACATATCCTGGCCACTGCTGTCTACCAAGCCAAAGAGAAGCTGAAGTCTATTGAAAAGGCCAGAAAAGGGAGTATCTCTTCAGAGGAGATCATCAAATACGCTCACAGGATCAGTGCCAGTAATGCAGTGTGTGCTCCTCTCAACTGGGTTCCAGGTGACCCCCGCAGGCCGTACCCCACTGATCTGGAGATGCGCAGTGGAATACTGGGTAACATGAGCAACATGTCCACCAACGGAGTGAATGGGCACCTGCCAGGAGACGCATTGGCTGCTGGGAGATTACCAGATATTCTAACCCCACAATATCCTTGGCAGTCAGCTGATGTTTCCATGGGGATTCTGCCTCCTCACCATGGCAACGATTTTGGCCTAGAGCCACCTGGTCATAACAAGGAAAATGAAGATGATGTCGAGGCCATGTCAACAGATTCCTCAAGCAGCAGCAGTGACTCAGACTGagagcgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtccacagtAACTTGTCCACCTGAACAGCTTGATAGTGCGTTGTCTGCATCTTTTCTGTGATTGTAGAGATCCAGATGCCAACATATACTGCTTTCAGGAGGACCAAACTTACACTGGTCATCTTTTCAgcaaagagtttttttttcattctccaGATGCCTTGCAGTCATCATTTGTTTGTATAATTTTATCCCACTGGCCTCAAATGTCACCAGTGCGTCGTTTTCATTGTGTGCAGACgggctcatttgcatttatttgtaaactaGTGAAGCATTACTGGTTTACAGCTGGAATATAAATAGCAATGTAAATACCTCTAAACTTTCAGactctgtaaataaaactttctttttttaa
>XM_043248153.1
AGGCGTCGCTGTCTGACGCACGCTTCTGCTGGTTATTTTTCACGCATGCGCAAAGCGAGGAGAAACAGTCATGGCGACGGCGGCGGCGGCAGCGGAGAAACCGACGAAAGAGAAGCTTCTATCCACTCTGGATGACATTGAAGTTTTATCCAGAGAGCTGATAGAGATGCTGGCGCTGTCCAGGACTCAGAAGATGCCCCAGCCTGGAGAGGACACTGATATACTGGAGCTGTTAGTGCAGAGAGATAAAGAGTTTCAGGAGCTCATGCAGACGGCAGTGGAGCAGGGCAAAGTGCACGGGGAGATGCAGGCGCTGGAGAAGGAAGTGGAGAAGAGAGACAGCGACATCCAGCAGCTCCAGAAACAGCTCAAAGAGGCTGAACATATCCTGGCCACTGCTGTCTACCAAGCCAAAGAGAAGCTGAAGTCTATTGAAAAGGCCAGAAAAGGGAGTATCTCTTCAGAGGAGATCATCAAATACGCTCACAGGATCAGTGCCAGTAATGCAGTGTGTGCTCCTCTCAACTGGGTTCCAGGTGACCCCCGCAGGCCGTACCCCACTGATCTGGAGATGCGCAGTGGAATACTGGGTAACATGAGCAACATGTCCACCAACGGAGTGAATGGGCACCTGCCAGGAGACGCATTGGCTGCTGGGAGATTACCAGATATTCTAACCCCACAATATCCTTGGCAGTCAGCTGATGTTTCCATGGGGATTCTGCCTCCTCACCATGGCAACGATTTTGGCCTAGAGCCACCTGGTCATAACAAGGAAAATGAAGATGATGTCGAGGCCATGTCAACAGATTCCTCAAGCAGCAGCAGTGACTCAGACTGagagcgtAGATCCAGATGCCAACATATACTGCTTTCAGGAGGACCAAACTTACACTGGTCATCTTTTCAgcaaagagtttttttttcattctccaGATGCCTTGCAGTCATCATTTGTTTGTATAATTTTATCCCACTGGCCTCAAATGTCACCAGTGCGTCGTTTTCATTGTGTGCAGACgggctcatttgcatttatttgtaaactaGTGAAGCATTACTGGTTTACAGCTGGAATATAAATAGCAATGTAAATACCTCTAAACTTTCAGactctgtaaataaaactttctttttttaa

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
mediator of RNA polymerase II transcription subunit 4

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248152.1 True 1236 mRNA 0.48 7 12453126 12456128
XM_043248153.1 False 1141 mRNA 0.48 8 12453126 12456128

Neighbor

gene id symbol gene type direction distance location
acvr2aa LOC107709421,LOC107673126,LOC107675352,LOC107601072 coding upstream 23770 12392286 ~ 12429356 (+)
LOC122351360 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding upstream 297153 12122231 ~ 12155973 (+)
arhgap15 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding upstream 366618 12046474 ~ 12086508 (+)
nepro si:dkey-22a1.3,LOC107733637 coding upstream 1067132 11382392 ~ 11385994 (+)
tex30 tex30,LOC107663828,LOC107567637 coding upstream 1071174 11379870 ~ 11381952 (+)
htr2aa htr2a,htr2aa,LOC107673120,LOC107709424,LOC107601068,LOC107724025,LOC107675342 coding downstream 26046 12482174 ~ 12507487 (+)
esd esd,LOC107675365,LOC107601075,LOC107709410,LOC107724032 coding downstream 58168 12514296 ~ 12518069 (+)
rubcnl rubcnl,LOC107709411,LOC107673128 coding downstream 98485 12554613 ~ 12560394 (+)
dnah7 dnah7 coding downstream 106331 12562459 ~ 12619422 (+)
LOC122352187 NA coding downstream 274708 12730836 ~ 12730962 (+)
G69578 NA non-coding upstream 130594 12322251 ~ 12322532 (+)
G69539 NA non-coding upstream 252529 12199934 ~ 12200597 (+)
G69518 NA non-coding upstream 443204 11979781 ~ 12009922 (+)
G69483 NA non-coding upstream 1029809 11420205 ~ 11423317 (+)
G69459 NA non-coding upstream 1207648 11245151 ~ 11245478 (+)
G69625 NA non-coding downstream 1136 12457264 ~ 12457498 (+)
G69659 LOC107709425,LOC107724026 non-coding downstream 62161 12518289 ~ 12526873 (+)
G69706 NA non-coding downstream 208884 12665012 ~ 12724840 (+)
G69718 NA non-coding downstream 317206 12773334 ~ 12773850 (+)
G69723 NA non-coding downstream 381591 12837719 ~ 12840151 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 761 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 297322 12046499 ~ 12155804 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other upstream 962977 11465604 ~ 11490149 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 1422717 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 2057896 10328731 ~ 10395230 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 171407 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 276170 12732298 ~ 12803408 (+)
G69755 NA other downstream 528740 12984868 ~ 12985978 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 833565 13289693 ~ 13304591 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 1220035 13676163 ~ 13684835 (+)

Expression


Co-expression Network