ptprna (ptprna,LOC107551086,LOC107688743,LOC107716786,LOC107602900,LOC107668387,LOC107721560)


Basic Information

Item Value
gene id ptprna
gene name ptprna,LOC107551086,LOC107688743,LOC107716786,LOC107602900,LOC107668387,LOC107721560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7304840 ~ 7328592 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248154.1
ATTCGTCGCCGGACACGGATTCACCTCACATTCGCCTGATATCAGTTCTTTCAATGTTCTGTCACTTTTTCTTTCCACCTTAGCCTCTTCGTGGGAGGAGGACAGCCGTAACCGCAAGGGAAGGAGCTGACCGTGTCCTGCGGTCGCTGCTGTGACCGACAGACGGCCACTCTTTCGTTTCAAAGGTAGACCTGGGCTCGACCTGCACAGTCTCTACCCCCCCTTCCTTCATTTTGAACGCAGGACTCTTCTTCGCAAACCTCCTGGTCTCTTTATGACGTAATTGCGGGTCCCCGCCACATCTCTGAAGGCAGATCGTGATTCCCGCTCCGGATCCGCACCACAAATTCAGGGCGTTCGTTAATGTCTCTGTATGTTTATTACTGCCCCAAAACGAAAGCCTACAGTTAACTCGTCTTACCTGACGCGTCCATCACTTGTGCTACGAGCGTTTGGCGCAAGCCCGCGGCACCGACAGGCAAAATGTGGATTTAAATTCTTGACGGAGGGCGACAAAACAACGCGTTGACTTCAAGCCCGCGGATAGTTAATATGATGCATCCACGAGTATGGAGAGCCCTGTTTTTGATGTCCGTGTTCTGCCAGCTCGGGATGGCAGGCAAATACGGCTGTTTGTTTGAGAAGAGGCTGTGCTCAAGGGAGCAGTTCTGCTCTGATGACAAGCTTTTTGGACAGTGCCGGAGCTCCAGACATGATCAGGTTCAGTACCAAGTCTCTGTTCCTGTTCTTCAAAGACTGCAGGAAGTACTCAAAGAGTTGATGCTTCaggGATTCTCCTGGCAGGATGAAATCACCCAGCACATCATTGCAAAGGAGCTGAGCCGTATTCCTCACGCACGCACGCAAAAGGTCCAGAATGCACAgccGCCACAGCCTGCAGCTAAGAAGGTGTATTCCAGCTCTAACTCTGAATCTGGTCCGGCTCAGAGCTACATGGATTACGTGGTGTTAGACCCTCACCAGTCCTCCTCGCTCCGGATGCAAGCCCTACCAATGGACCCGTACTCATACCTACAAGAGGACATGACCCATTCTCTCCATCCTCACACCAGCATGGGATACCAGAGACCCTCCTCTCGAGCTGGAGCCCAGCAAAGAGACAGAGACCGTCAGCTCCTGGAAGATGCCGTCTCGCTCTACCTCTCCTCCTCGCAACCCTCTTTCCGCCACAGGGGGGCAGCAGCCCTCCCTGCCGCCCCATACTATGAAGATCTAGATTTGCCTTTGGAATATGGAGAGGACTACACCCTACAGGAACAGCCCAGCTCAGCCCAGCGCAACAACAAGAAAGTCCCTCAGGACTACAGCTCTTTTTCTGGACTAGACGATGATACTCTGGCACAGCTGGCCACCCTGTTAAAGAGTTTTGGGGTGGACCCACGAGACCTGAGCCCTCAGCAGATAAAAAGACTTACTTTAGTTTTACAGCTGCTACAAAACATGGAGAATGCAGATCAATCTCCAGGGACAGTCACGGTAAAAGAGACAATTGTAGAAGGCAGTGataaagtgacagaaaaagGAGGGAAACCCCCCTTACCTGTTTCAGCTCTGCCCTCTACCCCAACCTACCAGCGGGCCCCTACTCAGCCCCCATCCACACCAGCCCCTGCCACTGTGCCTAAGGAAGACAGTGGGAGCTCTGTGGGGCCCACCCTGTCAGCCAAAGACCTggatttaaaagagaaaaccgCCAACATCTTGAAAACCGCTAAGGATGGGACAAACACCAGAGAGGAATATGGCTACATTGTCACTAATCAGAGTCCTCTAAGTCTTTACGATGGGGTGAAACTCTTAGAGACCCTGGCGGAGAGGATCCATCTCTCCACGAGCAGTTTCATCAACATTagCGTGGTGGGCTCGGCCCTGACGTTCAGGATCCGACAGAACCCTCTTAATCTCAGCGCCGAGGATGTGGCCAATAAAGCCGTCGCTGAGAAGAATTTCCTCGAGGGAGAGACAGGATTGAAAATCATCCAGACCGGAGTGGGAGAGAGGAGCGAGGGGCGTGGCTTGCCCCAGGCCACGCGGGTCGGGGAGGGTTCGCGTGGGGTCGTCCTCACAATGGTGGCCATGGCTTGCGTTGGCACGGTTCTGTTGGTCGCCCTCGCGATCGCCTGTCTCCGACACCAAGCCCGTCAGCTAGCCTCCGGCAAACTGGGTCTGGGACCAGAAGCCGGTGCGGAAACCCACTTTGATTACCAGGAGCTGTGTCGCCAGCACATGGCAGCCAAGTCATCGTTCGCCCGTCCGGAGCCAGGCGGTCGACGGGGGACCGACACATCTCGAGTCAGCAGCGTGTCGTCTCAGTTCAGCGACGGACCGCAGCACAGTCCCAGCTCTCACAGCAGCACACCGTCCTGGAGCGAAGAGCCTGCGCAGTCCAACATGGACATCTCCACCGGACACATGATACTGGCGTATATGGAGGACCATCTGAAGAATAAGGACCGGTTGCAGAAAGAGTGGGAGGCTCTGTGCTCGTACCAGGCTGAGCCGAGCTCTGTCTCTATCGCCCAGTCTGAAAGCAACATGGAGAAGAACCGCTATCCTGACTTTGTGCCCTacGACCATTCGAGAGTGAAACTGAAGGCAGAGGTCAACCCCTCCAAAGAGGACTACATAAACGCCAGCACTATAATTGATCATGATCCACGTTTACCTGCTTACATTGCAACTCAAGGACCTTTACCACACACTGTTGCTGATTTCTGGCAGATGGTGTGGGAGAACGGCTGTACTGTAATAGTGATGATGACCGCTCTAGTGGAGGATGGAGAGAAGCAATGCGAACGTTACTGGCCTGATGAAGGATCGTCTTTATACAACATCTATGAGGTGAACCTTGTGTCCGAACACATCTGGTGTAAAGACTTCTTGGTGCGTAGTTTCTACCTGAAGAACGTCCAGACTCAAGAGACACGCACTCTGACCCAGTTTCATCTGCTGAGCTGGCCTGCTCAAGGCATTCCCTCCTCCACGCGCCCCCTGCTGGACTTCCGCAGAAAAGTAAACAAGTGCTACAGAGGACGCTCGTGCCCAATCATTGTGCACTGCAGCGATGGAACCGGCAGAACCGGCACCTACATTCTTATCGACATGGTTCTCAACCGCATGGCGAAAGGCGTGAAGGAGATCGACATTGCCGCCACGCTGGAGCATATTCGTGACCAGAGGCCGAGTATGGTACGCACTAAGGACCAGTTCGAGTTCGCGCTGACAGCCGTGGCAGAAGAGGTGAACGCCATTCTCAAAGCCCTTCCTCAGTGAGCCACATCCCACCGTGTCACCATTACTATCTTCTTCACTCGCCCCTTTTCACGCCCCTCGCTCACTTTCACGAGTCAGAAACGAACACCGTCAATCTTTCAAAGACTACGGAAGCTTTCCAACGCTGGAAACACTTTGCAGGGGCCAAATGCTTCAGTCCTAATTGAGTTTCAGGGAGAAACGGTGGTAAGCATCAGATTTAAAGTGTCCTAATTTATGTAAATTGACAGTATAATGTtgtctttttataatatatatatatatatatatagatacatatgaTGTTTGATGTTGAAAAATGCAGGTTTTGTtcttaaaatgctttctttatCACGGCCGAAAATGCAAGTCATGCACCAAATGcggaaatgacaaaagaagcCACCATGTCTCATGCAGTCAAACATGAGGTCTTATATGCACGGTCGAGTCTGAACTCGTTGGAATGTACCCGAAAGGCACCCGTGATATCTTAAGGTTCCTGTCAAATGTTTTACAAACATTCAGCGCTTTCACATCTGTAACGTCTAGTGCCGCCTTTACGTCGTGTGACGATCACTGTAAATAATTCACCGAGAGCTCTGTTTATTCCTGTAGCAAACGTGTAGAaaattatccaaaaaaaaaaaaagagaagtataTTACTATAATTTTGAACTGGttctgaattaaatgtgaatctGTGTAGCAGCA
>XM_043248155.1
GGAAAGGTCACTTAGATGTCTcttgaaaaaaaagtctgtaCTATATCTCCATTGACAAAACGCTGCTGTTTGTTTGAGAAGAGGCTGTGCTCAAGGGAGCAGTTCTGCTCTGATGACAAGCTTTTTGGACAGTGCCGGAGCTCCAGACATGATCAGGTTCAGTACCAAGTCTCTGTTCCTGTTCTTCAAAGACTGCAGGAAGTACTCAAAGAGTTGATGCTTCaggGATTCTCCTGGCAGGATGAAATCACCCAGCACATCATTGCAAAGGAGCTGAGCCGTATTCCTCACGCACGCACGCAAAAGGTCCAGAATGCACAgccGCCACAGCCTGCAGCTAAGAAGGTGTATTCCAGCTCTAACTCTGAATCTGGTCCGGCTCAGAGCTACATGGATTACGTGGTGTTAGACCCTCACCAGTCCTCCTCGCTCCGGATGCAAGCCCTACCAATGGACCCGTACTCATACCTACAAGAGGACATGACCCATTCTCTCCATCCTCACACCAGCATGGGATACCAGAGACCCTCCTCTCGAGCTGGAGCCCAGCAAAGAGACAGAGACCGTCAGCTCCTGGAAGATGCCGTCTCGCTCTACCTCTCCTCCTCGCAACCCTCTTTCCGCCACAGGGGGGCAGCAGCCCTCCCTGCCGCCCCATACTATGAAGATCTAGATTTGCCTTTGGAATATGGAGAGGACTACACCCTACAGGAACAGCCCAGCTCAGCCCAGCGCAACAACAAGAAAGTCCCTCAGGACTACAGCTCTTTTTCTGGACTAGACGATGATACTCTGGCACAGCTGGCCACCCTGTTAAAGAGTTTTGGGGTGGACCCACGAGACCTGAGCCCTCAGCAGATAAAAAGACTTACTTTAGTTTTACAGCTGCTACAAAACATGGAGAATGCAGATCAATCTCCAGGGACAGTCACGGTAAAAGAGACAATTGTAGAAGGCAGTGataaagtgacagaaaaagGAGGGAAACCCCCCTTACCTGTTTCAGCTCTGCCCTCTACCCCAACCTACCAGCGGGCCCCTACTCAGCCCCCATCCACACCAGCCCCTGCCACTGTGCCTAAGGAAGACAGTGGGAGCTCTGTGGGGCCCACCCTGTCAGCCAAAGACCTggatttaaaagagaaaaccgCCAACATCTTGAAAACCGCTAAGGATGGGACAAACACCAGAGAGGAATATGGCTACATTGTCACTAATCAGAGTCCTCTAAGTCTTTACGATGGGGTGAAACTCTTAGAGACCCTGGCGGAGAGGATCCATCTCTCCACGAGCAGTTTCATCAACATTagCGTGGTGGGCTCGGCCCTGACGTTCAGGATCCGACAGAACCCTCTTAATCTCAGCGCCGAGGATGTGGCCAATAAAGCCGTCGCTGAGAAGAATTTCCTCGAGGGAGAGACAGGATTGAAAATCATCCAGACCGGAGTGGGAGAGAGGAGCGAGGGGCGTGGCTTGCCCCAGGCCACGCGGGTCGGGGAGGGTTCGCGTGGGGTCGTCCTCACAATGGTGGCCATGGCTTGCGTTGGCACGGTTCTGTTGGTCGCCCTCGCGATCGCCTGTCTCCGACACCAAGCCCGTCAGCTAGCCTCCGGCAAACTGGGTCTGGGACCAGAAGCCGGTGCGGAAACCCACTTTGATTACCAGGAGCTGTGTCGCCAGCACATGGCAGCCAAGTCATCGTTCGCCCGTCCGGAGCCAGGCGGTCGACGGGGGACCGACACATCTCGAGTCAGCAGCGTGTCGTCTCAGTTCAGCGACGGACCGCAGCACAGTCCCAGCTCTCACAGCAGCACACCGTCCTGGAGCGAAGAGCCTGCGCAGTCCAACATGGACATCTCCACCGGACACATGATACTGGCGTATATGGAGGACCATCTGAAGAATAAGGACCGGTTGCAGAAAGAGTGGGAGGCTCTGTGCTCGTACCAGGCTGAGCCGAGCTCTGTCTCTATCGCCCAGTCTGAAAGCAACATGGAGAAGAACCGCTATCCTGACTTTGTGCCCTacGACCATTCGAGAGTGAAACTGAAGGCAGAGGTCAACCCCTCCAAAGAGGACTACATAAACGCCAGCACTATAATTGATCATGATCCACGTTTACCTGCTTACATTGCAACTCAAGGACCTTTACCACACACTGTTGCTGATTTCTGGCAGATGGTGTGGGAGAACGGCTGTACTGTAATAGTGATGATGACCGCTCTAGTGGAGGATGGAGAGAAGCAATGCGAACGTTACTGGCCTGATGAAGGATCGTCTTTATACAACATCTATGAGGTGAACCTTGTGTCCGAACACATCTGGTGTAAAGACTTCTTGGTGCGTAGTTTCTACCTGAAGAACGTCCAGACTCAAGAGACACGCACTCTGACCCAGTTTCATCTGCTGAGCTGGCCTGCTCAAGGCATTCCCTCCTCCACGCGCCCCCTGCTGGACTTCCGCAGAAAAGTAAACAAGTGCTACAGAGGACGCTCGTGCCCAATCATTGTGCACTGCAGCGATGGAACCGGCAGAACCGGCACCTACATTCTTATCGACATGGTTCTCAACCGCATGGCGAAAGGCGTGAAGGAGATCGACATTGCCGCCACGCTGGAGCATATTCGTGACCAGAGGCCGAGTATGGTACGCACTAAGGACCAGTTCGAGTTCGCGCTGACAGCCGTGGCAGAAGAGGTGAACGCCATTCTCAAAGCCCTTCCTCAGTGAGCCACATCCCACCGTGTCACCATTACTATCTTCTTCACTCGCCCCTTTTCACGCCCCTCGCTCACTTTCACGAGTCAGAAACGAACACCGTCAATCTTTCAAAGACTACGGAAGCTTTCCAACGCTGGAAACACTTTGCAGGGGCCAAATGCTTCAGTCCTAATTGAGTTTCAGGGAGAAACGGTGGTAAGCATCAGATTTAAAGTGTCCTAATTTATGTAAATTGACAGTATAATGTtgtctttttataatatatatatatatatatatagatacatatgaTGTTTGATGTTGAAAAATGCAGGTTTTGTtcttaaaatgctttctttatCACGGCCGAAAATGCAAGTCATGCACCAAATGcggaaatgacaaaagaagcCACCATGTCTCATGCAGTCAAACATGAGGTCTTATATGCACGGTCGAGTCTGAACTCGTTGGAATGTACCCGAAAGGCACCCGTGATATCTTAAGGTTCCTGTCAAATGTTTTACAAACATTCAGCGCTTTCACATCTGTAACGTCTAGTGCCGCCTTTACGTCGTGTGACGATCACTGTAAATAATTCACCGAGAGCTCTGTTTATTCCTGTAGCAAACGTGTAGAaaattatccaaaaaaaaaaaaagagaagtataTTACTATAATTTTGAACTGGttctgaattaaatgtgaatctGTGTAGCAGCA

Function

symbol description
ptprna Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).

NR:

description
LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase-like N

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248154.1 True 3987 mRNA 0.51 23 7304840 7328592
XM_043248155.1 False 3423 mRNA 0.51 23 7307964 7328592

Neighbor

gene id symbol gene type direction distance location
tmem198a tmem198a,LOC107688741,LOC107716788,LOC107602903,LOC107551083,LOC107721592,LOC108423970,LOC107668403 coding upstream 13298 7271362 ~ 7291542 (+)
ihha ihha,LOC107716791,LOC107688738,LOC107721594,LOC107668405,LOC107551082,LOC107602904 coding upstream 57242 7241336 ~ 7247598 (+)
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 150874 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 151076 7149931 ~ 7153764 (+)
inpp4aa inpp4a,inpp4aa,LOC107676472,LOC107688733,LOC107602877,LOC107721597 coding upstream 162192 7117546 ~ 7142648 (+)
mnx2a mnx2a,LOC107551068,LOC107688780,LOC107602884,LOC107716783,LOC107668369,LOC107721589 coding downstream 35372 7363964 ~ 7366993 (+)
cfap65 cfap65,LOC107688747,LOC107668360,LOC107716758,LOC107735777 coding downstream 39072 7367664 ~ 7380524 (+)
LOC122351251 LOC107716765,LOC107721581,LOC107551069,LOC107668359 coding downstream 52226 7380818 ~ 7383202 (+)
fn1a fn1a,LOC107716781,LOC107688749,LOC107668382,LOC107721590 coding downstream 75760 7404352 ~ 7430484 (+)
pard3bb pard3bb,LOC107688750,LOC107716778,LOC107721601,LOC107668384,LOC107593023 coding downstream 145406 7473998 ~ 7728791 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 3345 7280767 ~ 7301495 (+)
G68424 NA non-coding upstream 41127 7262541 ~ 7263713 (+)
G68401 NA non-coding upstream 45446 7256680 ~ 7259394 (+)
G68405 NA non-coding upstream 105023 7199269 ~ 7199817 (+)
G68309 NA non-coding upstream 308984 6991833 ~ 6995856 (+)
G68435 NA non-coding downstream 6899 7335491 ~ 7336359 (+)
G68446 NA non-coding downstream 524889 7853481 ~ 7854278 (+)
G68668 NA non-coding downstream 875261 8203853 ~ 8205963 (+)
G68678 NA non-coding downstream 893995 8222587 ~ 8222817 (+)
LOC122351403 NA non-coding downstream 1272132 8600724 ~ 8614984 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1331717 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1419087 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1847311 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1847577 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1847997 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 1012703 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1102519 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1132152 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1534795 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1538505 8867097 ~ 8871633 (+)

Expression


Co-expression Network