tuba8l3 (tuba8l3,LOC107387629,LOC102223550,LOC108423972,LOC107716784)


Basic Information

Item Value
gene id tuba8l3
gene name tuba8l3,LOC107387629,LOC102223550,LOC108423972,LOC107716784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7343107 ~ 7346286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248156.1
TTCCTGCTAACcccctctcttcctcctccctcTTCCCTCTCTATAAAAACCCCACCTCTCCTTTCTTCTCCACATCTGCCTTCTCTTTCCGAACCCTCAAGTCGGCCTGAAGGGAAATCTGACAAGATGCGTGAGTGTATCTCTATGCATGTTGGCCAAGCTGGGGCCCAAATGGgaaatgcatgctgggagctTTACTGTCTGGAGCACGGTATTCAGCCGGATGGACAGATGCCCAGTGATAAGACAATAGGAGGAGGAGATGATTCCTTCAATACCTTCTTCAGCGAGACTGGAGCAGGAAAACATGTTCCACGTGCCATCTTTGTTGATCTGGAACCCACTGTGATTGaCGAGGTGCGTACAGGCACATATCGCCAACTGTTCCATCCTGAGCAACTAATTACTGGTAAAGAAGATGCTGCCAATAACTATGCCCGTGGTCATTACACCATTGGTAAAGAGATCATTGACCTAGTGCTGGACAGGACCCGCAAACTGGCTGATCAGTGCACTGGCCTTCAAGGATTTCTCATCTTCCACAGCTTTGGTGGAGGTACTGGCTCTGGCTTCACCTCCCTGCTGATGGAGCGTCTCTCCGTCGACTATGGCAAGAAGTCCAAGCTGGAGTTTGCCATCTATCCTGCTCCTCAAGTGTCCACGGCAGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAAGCCATCTACGACATCTGCCGAAAAAACCTGGACATCGAGCGTCCCACTTACACCAATCTCAACAGGCTCATTGGGCAGATCGTGTCTTCCATCACGGCCTCGCTGAGATTCGACGGAGCTCTGAATGTGGATCTCACAGAGTTCCAGACCAACTTGGTGCCCTACCCACGTATTCATTTCCCTCTGGCTACATACGCTCCTGTGATCTCTGCTGAAAAGGCATATCACGAGCAGCTCTCTGTGGCTGACATTACCAACGCCTGCTTTGAGCCGGCTAATCAGATGGTGAAGTGTGATCCTCGCCATGGTAAATACATGGCCTGCTGTCTGCTGTATCGTGGAGATGTGGTGCCCAAAGACGTCAACTCCGCCATCGCTGCCATTAAAACCAAACGTACCATCCAGTTTGTTGACTGGTGCCCGACTGGATTCAAAGTAGGTATCAACTATCAGCCACCAACTGTGGTTCCTGGTGGAGATCTGGCCAAAGTTCAGAGAGCCGTGTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGTCTAGACCACAAGTTTGACCTGATGTACGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGTGAAGGAATGGAGGAGGGAGAGTTCTCAGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTATGAAGAAGTCGGCACTGACAGCATGggagaggaggatgaagagggaGAAGAATATTAAAGAAGCAGAATTACGGCTtggaaaaattaaatcaatttaattttgcatttgcaattcaatttgcatttgaattggttttatagtaataaaatctgaatacgaaagaa

Function

symbol description
tuba8l3 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within glial cell development and myelination. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain; cranial ganglion; periventricular grey zone; and retinal inner nuclear layer.

NR:

description
PREDICTED: tubulin alpha chain

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007017 microtubule-based process biological_process
GO:0042552 myelination biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248156.1 True 1586 mRNA 0.50 4 7343107 7346286

Neighbor

gene id symbol gene type direction distance location
dnajb2 dnajb2,LOC107602899,LOC107668399,LOC107688744,LOC107716785,LOC107721618 coding downstream 6721 7329082 ~ 7336386 (-)
desma desma,LOC107688742,LOC107602901,LOC107716787,LOC107721591,LOC107668394 coding downstream 41578 7295578 ~ 7301529 (-)
LOC122352006 bin1,LOC107688739,LOC107716789,LOC107721593,LOC107668401,LOC563561 coding downstream 74807 7259194 ~ 7268300 (-)
slc23a3 LOC107688765,LOC107716759,LOC107602874,LOC107721561 coding downstream 86494 7248019 ~ 7256613 (-)
mitd1 mitd1,LOC107688779,LOC107668392,LOC107721562,LOC107721614 coding downstream 125099 7215013 ~ 7218008 (-)
LOC122352131 si:ch73-199e17.1,LOC107668388,LOC107716782,LOC107716784,LOC102213860,LOC101168255,LOC102793273 coding upstream 824 7347110 ~ 7349416 (-)
si:ch211-67e16.11 si:ch211-67e16.11,LOC107596562,LOC105899123 coding upstream 534892 7881178 ~ 7892408 (-)
si:ch211-67e16.4 LOC107596547,LOC107738112,LOC107668355,LOC107688758,LOC107752914,LOC107592999 coding upstream 591766 7938052 ~ 7947805 (-)
si:ch211-67e16.3 NA coding upstream 602094 7948380 ~ 7952282 (-)
LOC122352095 LOC107688783,LOC107738103,LOC107596557 coding upstream 608803 7955089 ~ 7957338 (-)
G68473 NA non-coding downstream 1613 7327829 ~ 7341494 (-)
LOC122352164 NA non-coding downstream 307746 6982678 ~ 7035361 (-)
LOC122351994 NA non-coding downstream 447710 6892652 ~ 6895397 (-)
G68357 NA non-coding downstream 460131 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 530092 6809848 ~ 6813015 (-)
G68489 NA non-coding upstream 35004 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 468963 7815249 ~ 7818832 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding upstream 473722 7820008 ~ 7821889 (-)
LOC122352023 NA non-coding upstream 1124577 8470863 ~ 8474578 (-)
G68822 NA non-coding upstream 1415485 8761771 ~ 8835225 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 189153 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 1082038 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 1243195 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 1299182 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 1411971 5912855 ~ 5931136 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 668163 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 730182 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 2561902 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3087221 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 3168986 10515272 ~ 10519457 (-)

Expression


Co-expression Network