casq2 (casq2,LOC107569839,LOC107690483,LOC107595834,LOC107756748,LOC108432573)


Basic Information

Item Value
gene id casq2
gene name casq2,LOC107569839,LOC107690483,LOC107595834,LOC107756748,LOC108432573
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16092730 ~ 16097066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248160.1
CATCCTATTACCAGCACAATCCACCAGCCACTCTTTGTCTGTGGTTAGGAGAGAAGGCAGAGAGTCAAGGGTTTGCCTgagaaaagctgaattttcagaagaAGGGTACGCAAACCCTCAGAAAGAACGGTGGAAAAAGGCCTGGATGCTTGCCACCGTAATTGTTTCTGTTATAAACTCTTGAATTATATTCTATTTCTGACACTTCTAGACCAGAGCTATCTTAAGCTGCATGAAGAGCCACCGTTTCTTTCTGGAAAGGTCTTAAGTCACTAGTATAGACAATGCAGAGCACCTGGATCCTGCTGCTTGCCTCTCTGGGCTTCTCTACCCTGGCTGGTGCTGAGAAAGGCCTCGAGTTCCCACGTTATGATGGCAAAGATCGTGTCCTGGACATAAATGAGAAGAACTACCGCAAAGCCCTGAAGAAATACGACATGCTGTGCCTGTTCTACCACGCTCCTCTGCCAACTGCAAAAGAACTGCAGAAACAGTTACAAATGACTGAATTAGTGCTAGAGTTAGCTGCTCAAGTCTTGGAGGAAAAGGATATTGGCTTCGGAATGGTTGACTCCCAAAAAGATGCTAAGGTTGCCAAGAAACTAGGTCTGCATGAGGAAGGCAGTGTCTATGTCTTTAAGGATGACCGTGTGATTGAATTTGATGGCCTGCTCGCTGCAGACACTCTTGTGGAATTCCTTTTGGATCTGTTGGAAGATCCGGTTGAGATCATTGACAATGCTTTGGAGCTACAAGCTTTTGACCGTATGGAAGAAGACATCAAGCTCATTGGTTTCTTTAAGAGTCATGACTCTGAGCATTATCTTGCTTTCCAAGAGGCAGCTGAACAGTTTCAGCCTTTTATCAAATTTTTTGCCACCTTTGAGAAATCAGTTGCGAAAGAGCTGACTCTGAAGATGAATGAGGTAGACTTCTATGAGCCCTTCATGGAGGAACCGATCACCGTTCCAAACAAACCACACTCAGAAGAAGAGTTGGTGGCCTTCATATCCGAACACAGGAGACCAACTCTGAGAAAGCTCAGGGCAGAAGATATGTTTGAGACCTGGGAGGATGATTTGAACGGAATTCACATTGTAGCCTTTGCAGAAGAGGAGGACCCAGATGGTTTTGAATTCTTGGAGATATTAAAGGAGGTGGCCAGAGACAACACACACAATCCAGACCTGAGTATTGTGTGGATTGACCCAGACAACTTCCCACTGCTCATTCCTTACTGGGAGAAGACCTTCAAGGTTGACCTCTTCAGGCCACAGATCGGTGTAGTTAATGTTACAGATGCGGACAGTGTCTGGTTGGAGATATCTGATGATGATGACCTGCCATCGTCTGAAGAGCTGGAAAACTGGATAGAAGATGTGCTCTCTGGAACAGTGAATAcagaggatgatgatgatgatgatgatgatgacgacgacgatgatgaagacgatgacgatgatgacaatgatgatgacgatgatgatgatgacgatgatgaagatgatgacgatgatgacgatgatgatgaatgATTCATATACTGTGAACCTCAACGAATCtgctaaaaataactttttttcagctaaatcattttgtacattttgcgCACTGCATAAATTGAAATCATACAAGTCAAAGAATTCTATTATTTATCTAGgcgaaaataatttattttcatcacCTCCAAACTGGAAATATACTTGATAAAGGGATTCAAATGAAATTCTGCAGTGCAAGTTTGTCACTGCATCAGTATTTACTCTCCTGTACAGTTTCTATGTAATCAATCACACAAGGCAATAAAACTTTATAACAGG
>XM_043248162.1
ATTACCAGCACAATCCACCAGCCACTCTTTGTCTGTGGTTAGGAGAGAAGGCAGAGAGTCAAGGGTTTGCCTgagaaaagctgaattttcagaagaAGGACCAGAGCTATCTTAAGCTGCATGAAGAGCCACCGTTTCTTTCTGGAAAGGTCTTAAGTCACTAGTATAGACAATGCAGAGCACCTGGATCCTGCTGCTTGCCTCTCTGGGCTTCTCTACCCTGGCTGGTGCTGAGAAAGGCCTCGAGTTCCCACGTTATGATGGCAAAGATCGTGTCCTGGACATAAATGAGAAGAACTACCGCAAAGCCCTGAAGAAATACGACATGCTGTGCCTGTTCTACCACGCTCCTCTGCCAACTGCAAAAGAACTGCAGAAACAGTTACAAATGACTGAATTAGTGCTAGAGTTAGCTGCTCAAGTCTTGGAGGAAAAGGATATTGGCTTCGGAATGGTTGACTCCCAAAAAGATGCTAAGGTTGCCAAGAAACTAGGTCTGCATGAGGAAGGCAGTGTCTATGTCTTTAAGGATGACCGTGTGATTGAATTTGATGGCCTGCTCGCTGCAGACACTCTTGTGGAATTCCTTTTGGATCTGTTGGAAGATCCGGTTGAGATCATTGACAATGCTTTGGAGCTACAAGCTTTTGACCGTATGGAAGAAGACATCAAGCTCATTGGTTTCTTTAAGAGTCATGACTCTGAGCATTATCTTGCTTTCCAAGAGGCAGCTGAACAGTTTCAGCCTTTTATCAAATTTTTTGCCACCTTTGAGAAATCAGTTGCGAAAGAGCTGACTCTGAAGATGAATGAGGTAGACTTCTATGAGCCCTTCATGGAGGAACCGATCACCGTTCCAAACAAACCACACTCAGAAGAAGAGTTGGTGGCCTTCATATCCGAACACAGGAGACCAACTCTGAGAAAGCTCAGGGCAGAAGATATGTTTGAGACCTGGGAGGATGATTTGAACGGAATTCACATTGTAGCCTTTGCAGAAGAGGAGGACCCAGATGGTTTTGAATTCTTGGAGATATTAAAGGAGGTGGCCAGAGACAACACACACAATCCAGACCTGAGTATTGTGTGGATTGACCCAGACAACTTCCCACTGCTCATTCCTTACTGGGAGAAGACCTTCAAGGTTGACCTCTTCAGGCCACAGATCGGTGTAGTTAATGTTACAGATGCGGACAGTGTCTGGTTGGAGATATCTGATGATGATGACCTGCCATCGTCTGAAGAGCTGGAAAACTGGATAGAAGATGTGCTCTCTGGAACAGTGAATAcagaggatgatgatgatgatgatgatgatgacgacgacgatgatgaagacgatgacgatgatgacaatgatgatgacgatgatgatgatgacgatgatgaagatgatgacgatgatgacgatgatgatgaatgATTCATATACTGTGAACCTCAACGAATCtgctaaaaataactttttttcagctaaatcattttgtacattttgcgCACTGCATAAATTGAAATCATACAAGTCAAAGAATTCTATTATTTATCTAGgcgaaaataatttattttcatcacCTCCAAACTGGAAATATACTTGATAAAGGGATTCAAATGAAATTCTGCAGTGCAAGTTTGTCACTGCATCAGTATTTACTCTCCTGTACAGTTTCTATGTAATCAATCACACAAGGCAATAAAACTTTATAACAGG

Function

symbol description
casq2 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion. Predicted to be located in sarcoplasmic reticulum. Predicted to be active in Z disc and sarcoplasmic reticulum lumen. Is expressed in Purkinje cell; adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia 2. Orthologous to human CASQ2 (calsequestrin 2).

NR:

description
PREDICTED: calsequestrin-2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23445 CASQ2; calsequestrin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248160.1 True 1820 mRNA 0.43 11 16092730 16097066
XM_043248162.1 False 1708 mRNA 0.43 12 16092730 16097060

Neighbor

gene id symbol gene type direction distance location
fhip1b fam160a2,LOC107690600,LOC107731760,LOC107690485,LOC107569793,LOC107719813 coding downstream 67797 16006180 ~ 16024933 (-)
LOC122351503 LOC107731735,LOC107690619,LOC107690492,LOC107595881,LOC107570033,LOC107719821 coding downstream 86686 15998141 ~ 16006044 (-)
hpxa LOC107690487,LOC107719811,LOC107595840 coding downstream 114429 15974565 ~ 15978301 (-)
LOC122351640 LOC107719827 coding downstream 119169 15966763 ~ 15973561 (-)
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding downstream 126263 15963794 ~ 15966467 (-)
slc5a3b slc5a3,LOC107748166,LOC107673698,LOC107569828,LOC107690482,LOC107595832,LOC107756792,LOC568338 coding upstream 9693 16106759 ~ 16116264 (-)
rpl8 rpl8,LOC107595836,LOC107748161,LOC107673716,LOC102782025 coding upstream 84688 16181754 ~ 16183111 (-)
LOC122351999 caska,cask,LOC107565944 coding upstream 106907 16203973 ~ 16300457 (-)
LOC122352003 caska,LOC107673660,LOC107565944 coding upstream 236119 16333185 ~ 16418774 (-)
mao mao,LOC107748155,LOC107673703,LOC107565948,LOC107595828,LOC107695498 coding upstream 380477 16477543 ~ 16504927 (-)
LOC122352066 NA non-coding downstream 138754 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 330061 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 448454 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 454294 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 671153 15418999 ~ 15421577 (-)
G70894 NA non-coding upstream 21216 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 508301 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 513204 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 516051 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 533420 16630486 ~ 16715102 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 320866 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 693293 15389218 ~ 15399437 (-)
G70549 NA other downstream 786755 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1720056 14359646 ~ 14372674 (-)
G70317 NA other downstream 1838954 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 623738 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 720074 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 789687 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1138806 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1267121 17364187 ~ 17521560 (-)

Expression


Co-expression Network