lss (lss,LOC107714200,LOC107673746,LOC107660663)


Basic Information

Item Value
gene id lss
gene name lss,LOC107714200,LOC107673746,LOC107660663
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18675151 ~ 18682202 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248163.1
ACCGTCTTCATCAGCTGAAATACGACCGGTTCTTTTCAGTTTACAAGTGTTGCTCATGCACTTTAAAGATGACAGAGGGAACGTGTTTGCGGAGACGGGGAGGCCCCTATAAGACTGAGCCAGTGACAGATCTCAGCCGCTGGAGGTTGAGTAATGTGGAGGGCAGACAGACCTGGAGGTACATTGAGGAGGCAGACTGTGTGGACAGACAGCAGAGCATGCTGGAATCTCACTCTCTGGGACTGGACACGGGTGAGTTCTTCTCAGCATCCCCTGCCACACACACTGCAGTAGAAGCTGCACTGAAGGGAATGGACTTCTACAGCCGTCTCCAGGCTGAAGATGGACACTGGGCTGGGGATTATGGTGGACCACTTTTCTTACTTCCAgGTCTGCTCATAACCTGTCATATTGCTAAGATCCCTCTGCCAAATGCATGGAAGCAGGAAATGGTTAGATACCTTCGCTCTGTGCAGCTGCCTGACGGAGGCTGGGGCCTGCACATTGAAGATAAGTCTACTGTTTTTGGAACAGCTTTGAATTACACCACCCTGAGAATCCTGGGAGTTGGTCCCGATGATCCAGACATGGTTCGCGCAAGGAATATTTTACACAGCAAAGGCGGTGCCGTCGGTATACCTTCCTGGGGTAAATTCTGGTTGGCCATCCTCAACGTATACAGCTGGGAAGGGATGAATACGCTCTTTCCAGAGATGTGGCTGTTCCCTTCCTGGGTGCCGGCACATCCCTCCACTTTATGGTGCCACTGTCGCCAGGTCTACCTGCCCATGAGCTACTGTTACGCAGTTAGGCTGTCTGCCGATGAAGATCCACTGATACTCAGTTTAAGACAGGAGCTCTACGTCCAGGACTACTCGACTATTGACTGGCCAGCTCAGAGGAACAACGTTGCAGCTTGTGACTTGTACACACCACACAGCACCTTGCTTACTGTTGCTTATTTGCTCCTGAATGTGTATGAAGCACATCACAGCACTATGCTTAGAGAAAAAGCAGTGAAGGAACTTTATGACCATATTAAAGCAGACGATCGCTTTACTAAGTGTATCAGCATTGGCCCGATTTCGAAAACGATCAACATGCTGGTACGCTGGTATGTGGATGGACCCACATCACCTGCCTTTCAGGAGCATGTGTCAAGGATTCCTGACTATCTATGGCTGGGTTTGGATGGCATGAAAATGCAGGGTACAAACGGATCACAGTTATGGGACACTGCATTTGCAGTACAAGCATTTCTGGAGgCAGGTGCCCAGGACATCCCCAGGTTTACAGAGTGCCTCACACAAGCCCATCATTTCTTTGATCTGACTCAgatCAAAGAAAATCCTCTAGAATATGAGAAATACTACAGACAAATGAACAAGGGAGGTTTTCCCTTCAGCACACGGGACTGTGGTTGGATAGTGGCGGACTGTACAGCAGAAGGACTGAAATCTGTGATGCTGCTGCAGGAGCAGTGCGGTTTCCTCAAAGAAAAAATTCCCACTCAAAGACTCTTTGATGCTGTCAATGTGCTGCTAAGCATGAGAAATCCCGATGGAGGGTTTGCCACGTACGAGACCAAACGTGGTGGAAAACTGCTAGAGCTGCTGAACCCATCTGAAGTGTTTGGTGATATAATGATCGACTACACTTATGTTGAGTGTACCTCAGCCGTAATGCAGGCACTGAAACACTTTCACAGCGTATATCCTGAGCATAGAGCAAAAGAGATTAGGACAACTCTCCAGCAGGGTCTGGAATACTGCAGGAGGGTTCAGAGACCTGATGGCTCATGGGAAGGGTCCTGGGGAGTGTGTTTCACATATGGAGTCTGGTTTGGTCTGGAGGCATTTGCAAGTATGGATCACACTTTCCAAAACGGATCTGTTTGTGTGGAGGTTAAGCGTGCCTGTGAGTTCCTGCTGTCAAAGCAGATGGAGGATGGAGGCTGGGGCGAAGACTTTGAGTCATGTGAGCAGCGGCGCTACGTTCAGAGCAAGAACTCACAGATCCACAACACCTGCTGGGCTTTGCTGGGGTTGATGGCTGTCAGGTACCCTGACATCAGAGTGATCGAGCGAGGCATTCAAGTTCTGATTGATAGGCAGCTGCCCAATGGAGACTGGCCACAGGAGAATATTTCTGGAGTGTTCAATAAAAGCTGTGCCATCAGCTACACCTCTTACAGGAATGTGTTTCCTGTGTGGACTCTGGGCCGTTTCTTACGGCTCTACCCCTGCAGTCCTCTGGCTGGGAAACTCAAACTCTGAGTCAGATACTGTGTACTTGTGCCTTCAATAAGCACTATCCGATCAAAGACCATTCTTATTTGAAACAAACCTGTTTGCTGCTCTATAGAAAGTAGGACTGATTTATCAAAGTCTTCAGAATATTATCtacataatgtttaatttttttgtgcttatttaACCGTGGGACCAAGGTGTTGTATCCTGTAGATGATTGTgtaattaaaagtgattttctgtACTCTtacaataaatagttttatattttg

Function

symbol description
lss Predicted to enable lanosterol synthase activity. Predicted to be involved in cholesterol biosynthetic process. Predicted to act upstream of or within triterpenoid biosynthetic process. Predicted to be active in lipid droplet. Is expressed in several structures, including heart; integument; liver; pleuroperitoneal region; and skeletal muscle. Human ortholog(s) of this gene implicated in alopecia-mental retardation syndrome 4; cataract; cataract 44; and hypotrichosis 14. Orthologous to human LSS (lanosterol synthase).

NR:

description
lanosterol synthase

GO:

id name namespace
GO:0016866 intramolecular transferase activity molecular_function

KEGG:

id description
K01852 LSS, ERG7; lanosterol synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248163.1 True 2524 mRNA 0.48 22 18675151 18682202

Neighbor

gene id symbol gene type direction distance location
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding upstream 413 18663351 ~ 18674738 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding upstream 12281 18659765 ~ 18662870 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding upstream 17441 18653071 ~ 18657710 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding upstream 22229 18649212 ~ 18652922 (+)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding upstream 48737 18620886 ~ 18626414 (+)
osbpl11 LOC107741915,LOC107555931,LOC107660623,LOC107596076,LOC107714164 coding downstream 10373 18692575 ~ 18708193 (+)
snx4 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107714137,LOC107673751 coding downstream 38971 18721173 ~ 18733013 (+)
znf148 znf148,LOC107673743,LOC107660621 coding downstream 52217 18734419 ~ 18740056 (+)
slc12a8 slc12a8,LOC107741923,LOC107660618,LOC107673744,LOC107714115,LOC107555904 coding downstream 60608 18742810 ~ 18760266 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding downstream 78258 18760460 ~ 18771739 (+)
G71334 NA non-coding upstream 131153 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 133815 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 136451 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 644603 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 1032713 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 65709 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 207721 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 298111 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 568637 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 573828 19256030 ~ 19256233 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 32665 18635106 ~ 18642486 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 55764 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 64223 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 710907 17736006 ~ 17964244 (+)
G71130 NA other upstream 1335529 17339127 ~ 17339622 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 470 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 214400 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 830652 19512854 ~ 19543677 (+)
G71585 NA other downstream 939082 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 1027162 19709364 ~ 19714404 (+)

Expression


Co-expression Network