fundc1 (fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742)


Basic Information

Item Value
gene id fundc1
gene name fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16538368 ~ 16540651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248169.1
GTGGACGGCGATCGCACGTAAATTGCGTAGGTTTGTGCGTAGAGCTGCAGAGGTTTCTGGTACTGTGAACGGAGCCTCATAAAATGGCGGATCGCGGTGAAGatgTAGATGCAGAGAGTGAAGATGAATTATATGAGGTGGTTAACATCACAGATTACGCCAGGAGGCATCAATGGTGGAGTCGTGTTTTTGGGAACAGCACAGGACCCATTGCAGAAAAGTACTCCGTGGCTTCACAGATCATGATGGGTGGAGTGTCGGGATGGTGTGCTGGTTATCTTTTTCAGAGAGTTGGAAAAATTGTGGCAACTGCTGTTGGAGGGGGATTTCTTTTGCTACAAattgCAAACCACAGTGGCTATGTTCAGGTAGACTGGAGGAAAGTGGAAAAGGATGTgaataaagcaaaaaagcatttgaagaaaaaagcaaacaaagcagCCCCTGAGCTCAATTCTTTTATAGAAGAATCGACAGAATTTGTGAAGAGGAATATTGTTATCTCGGGTGGATTTGTTGGAGGATTTCTGCTGGGACTGGCATCCTAGTTTGCACATTAATATTTTCGTTTATGTCAGTATCACAGCGATACAAAACTGAAACTTGATGTATTGTCTGAAGCAGTGAGTGCAATGGACATTTGCTGAATCGTTGTTCCAAATATATACCTCTTCAATGCTGTTCTTAACTGTACATAGCTTAGTCATCCTGATGAAGAGAGAGATATTGTGCCAATAACTTTATAGAACATTGCTGGTGtggttttatgatttttgttttgcctACTTTTAATCAGTAAGACACAAACGTGAGGTCTGTTACATAAACTTATTGTATTTTGACAATACATTGTCTGAGTTAGTTTTATAATTTCCTGAATGTTTACTtgcatgtattgtttttttgttctgagtgttttactttttgtgacagatttttaaaatatacagaataaCCCACCAATAACATGTttgtggaaataataaaaaatgtctttctggTTA

Function

symbol description
fundc1 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000422 autophagy of mitochondrion biological_process
GO:0001666 response to hypoxia biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component

KEGG:

id description
K17986 FUNDC1; FUN14 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248169.1 True 1004 mRNA 0.39 5 16538368 16540651

Neighbor

gene id symbol gene type direction distance location
efhc2 efhc2,LOC107673658,LOC107756743 coding downstream 293 16526525 ~ 16538075 (-)
LOC122351145 ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887,LOC107565935 coding downstream 22924 16509560 ~ 16515444 (-)
mao mao,LOC107748155,LOC107673703,LOC107565948,LOC107595828,LOC107695498 coding downstream 33441 16477543 ~ 16504927 (-)
LOC122352003 caska,LOC107673660,LOC107565944 coding downstream 119594 16333185 ~ 16418774 (-)
LOC122351999 caska,cask,LOC107565944 coding downstream 237911 16203973 ~ 16300457 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding upstream 39080 16579731 ~ 16584061 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding upstream 154103 16694754 ~ 16698639 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding upstream 211352 16752003 ~ 16760172 (-)
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding upstream 221222 16761873 ~ 16767185 (-)
grtp1b grtp1b,LOC107748194,LOC107695480,LOC107673704 coding upstream 358012 16898663 ~ 16902174 (-)
G70894 NA non-coding downstream 418049 16118282 ~ 16120319 (-)
LOC122352066 NA non-coding downstream 584392 15948113 ~ 15953976 (-)
G70660 NA non-coding downstream 775699 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 894092 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 899932 15628883 ~ 15638436 (-)
LOC122351188 NA non-coding upstream 64716 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 69619 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 72466 16613117 ~ 16613424 (-)
G70967 NA non-coding upstream 89835 16630486 ~ 16715102 (-)
G70962 f5,LOC107756778,LOC107748149,LOC107565953,LOC107673674 non-coding upstream 172168 16712819 ~ 16713846 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 766504 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1138931 15389218 ~ 15399437 (-)
G70549 NA other downstream 1232393 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2165694 14359646 ~ 14372674 (-)
G70317 NA other downstream 2284592 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 180153 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 276489 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 346102 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 695221 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 823536 17364187 ~ 17521560 (-)

Expression


Co-expression Network