LOC122351260 (hs6st3b,LOC107733651,LOC107555209,LOC107663930,LOC107600438,LOC107720131,LOC107655503)


Basic Information

Item Value
gene id LOC122351260
gene name hs6st3b,LOC107733651,LOC107555209,LOC107663930,LOC107600438,LOC107720131,LOC107655503
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9895081 ~ 9906181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248207.1
ctccctctccctctctctctctctctctctctctctctctctctcctcacacgAAGAGCAAGTTGCAACAGGAACTCAACTTCTTAAATCTCATCTCGGAGACCTGCATCCCAAAGCGGTGCAATCAGCTCTGAAGCCCGGCGCGACGGAGCAGATCTCTGGACGTGTTTTACAATGGGTCCGGATCTCGCGTTACGATCCATCGGAGGAGGAAAGCTCAAGTTTACGCTAAACGCGTTACGCTAGACGATCCGCGCTGCAGATGGATGTTCAGAGACGTGCACCGGTTTATCCGACAGTTTATGAGAACGCTCGCAACGCGTCGTTTGCAAGTTTAGCGCGATGTGGAAACGCGAGGCTTGTTTTTGACTTCTGCCCACGATCCGACGGTTCGGCTGACCTTTACGTAACTATGATTTAACTGAAGGCGCGTTCGTCTGCGATCTTGCCCGCGAGCATCATCCGTGGAAAGCACCTGGAGGACTCCATCAGCGGCTACAGCATCACCAATGGCGTGATCATCCGGTTCACTGTCTTTGCAATGGATGATAAATCCAACAAACTCCTTTTAGTTCCCGTTTTGACCGTTTTGTTTGTCATGATCGGCTATCAGTACATCTGTCCAGCGGGGAGCACGTCTTGTCGGTTCGGCAACGGAGAGAGTTTCCCGTTCTCGGTGTATCCGGCAGACGTCAAGAGAGAGTCTCCGGATTCGGACGAGGACGCCCCGTTCAGATTCCCGTCCAAATTCAACTTCACGCGCGAGGACCTCTATCGCCACGTGGATTTCGACATCAAGGGGAACGACGTGATCGTGTTCCTCCACATCCAGAAGACCGGAGGAACGACGTTCGGGAGGCACCTGGTGCGCAACATCCACCTGGAGCGACCGTGCGACTGCCGCTCCGGACAGAAGAAGTGCACGTGTCACCGGCCCGGTAAAGCGGAGTCGTGGCTCTTCTCGCGCTTCTCCACGGGATGGAGTTGCGGTCTCCACGCGGACTGGACCGAGCTCACGAACTGCGTCCCCGCTGtgatgaataaaaagcaaaagaaagacGCGCCATTGAACAGGCGgaacTTCTACTACATCACCATGCTGCGAGACCCTGTGTCACGTTACCTGAGCGAATGGAAGCACGTGCAGCGCGGTGCCACCTGGAAGACTTCGCTTCACATGTGTGACGGCCGGTCGCCCACACAGGACGAACTGCCCACCTGCTATAACGGAGACGACTGGTCGGGGGTCACCCTGCATGAGTTCATGGACTGCCCTTCAAACCTGGCCAACAACCGGCAGGTGCGTATGCTGGCCGATCTCAGCCTGGTGGGCTGCTACAACCTCTCCACCATGAACGAGAGCGAGCGCAACCCTATTCTCCTGGCCAGCGCCAAGAGCAACCTGAAGAACATGGCTTTCTACGGCCTGACCGAGTTTCAGCGCAAGACGCAATACCTGTTCGAGCGCACTTTCCGCCTGCAGTTCATTTCCGCCTTCACGCAGATCAACAGCACGCGTGCCGCCAACGTTGAGCTGCGTGACGACATGCGCAGACGCATTGAGCTGCTCAATTTCCTGGATATGCAGTTGTACGAGTTCGCCAAGGAACTTTTCCTGCAGAGATACCAGTTCATCCGTCAGCGTGAGCGGCAGGAGGAGAGGTTGAAGAGGCGAGAAGAGAGACGCTGGCTCAGGGAGCGCAGAGTCAACCAGAACAAACAGCCCGGTGTGGAAAACCAACCTCAGGTCACCACAACCGAGGACTATGCCAGCCAAGTGGTCCATTGGTGATACCTCTTGGAAACGTGCACTAGAACACAGAGAACATAATGGATCACTTGAGGAAGAGTAGGGCACAGTTTGGGCTCTGTCTAGCACTCTAACGAGGGTTTTTTTTAGTCATGAAGCCTgttgcactgcaaaaaaagcatTGCCTTGAGCAGTATTTTTGAAAGATTTCCAGGGGGGAAAAATAATATCAGTTACATAagaagtaaagtaaaataaataagtaaaaaaaatcacacttagatttattttcaacattaaaattacttttactgCTTAAAtcaacacatacatgcacaaatTAACATACGTGAACTCTTATTTGAAGATACAATAACTTAATTTTGGGTtggtactttttaaaatgtttttaaaggctGTCATCAGTAAACCAGCTCCTTCTTCAGAACTACAGTAAAAGCAgcaattttgtgaaataacataataacaataattttctATTTAGATATATTCCTGTAAAAGCCGAATATCAACCGCCATTACTTTTgtcttgatccttcagaaatcatgtgcaaatctggtgctcaagaaacattcctGGTActgtcaatgttgaaaacaactgTGCAGCTTAatatcattgtgtttttttaattctttcatttatataaaattcaaaagagCAGTATTAATTCGAAACAGACTAGAAATagaattttgtaacattataaacatcttgtctcttttgattcatttactgggtccttgctgaataagtattaataagtattaatttcatttaacattaacatttgaaaattcAACGAGAAGTGTTGATCATTTGCTTTGCACAATATGTATTAGATGAAATAGAGCTGTCATTGTGCACGGTGCAACTACAGATCCATTTTcagtaattaacatttttacattaattgcaTTCAGCACTCACATTtagtttgatatttttactgtaaaacacgGCAAAAATACTGcttaagaaaatcatttttgcagtgtgtgtgcacatttttttttctgcagattCCTTGCAGAATGCAGGATCTGTGCTCATTCGCCAAGCAACCTCCACCGTCTTTGTGAAGGATCAACAAACCCCACACCACAGAGTTATAGAAAGCTATAGCCCTGAAAAAGTGAAGGGAGCACACTTAAGATGTGTTCTTGCTTTCAAAATCACTAGGCAGTGGATGAAGTAAAATGTTGACAAGTTTTTAATGCTCAGGCCTTTTGCCAGTAAAGATTCTCagtagactctctctctctctctctctctctctctctctctctctctctctcttttttttttttaaggagcaAGCTTGCAGCATGGAGACAGTTTGTACTGAGAATCTCTAGTCTCTAGTAGTTTCTCAATGATATGTCGTACAATTCAGGGTTAGCAGATTCCCTCACAACAAGAGCCTCATCTGTGACACAGTAGCAGAGACTTGTTGCTACCGTAAACACTACATggtatttaaaatgctttttcttcatTGTTTTGTCAAGTATTATTTATTGGTGTATGAGTTGCACAAGAAGaacgttaaaaaaataaattaaatgcaatgcaagtaAAAGTATAAACTAAACAGACAGAGTTGAGAGATTATGTatataatgaatgcaaaaaaagaaaaaagttaaaaatagcacagttggAATGTGAAAACACTTCATGTATGTACGTCCCCTAAAGGTGAAAAATTCacatcacacaaaaaaaacaaaaaagattgcACACAGTTGTTCAAAGTTCAATTTCTTGTCTCATTAGTTCACATCTGACCTAAAATAGAGCAGCATAAAGACTTTAGGATTATTTGAAAACAGGattaatcaaatacaaaatgcattatgcagCAAGAGAAGTATGTTTTTTTCAGGAAGATTGAATGAATGGCTGAGTATTTTGTTTCTTCTCCAGTGCTGTTTCACACATTTCTGTAGTCCGTCCACCCTAAAACTTTCTGAAGCCAGAACGTCCAAGTCACAGGGAATGAAGCGCTTGTGGTCTTTACGTCCTTAAACCATCGGCGCTTTAAAAGCAGATCTTTTTCTGGTCTGTGCTTTGTGGCACCTTTTAAAAACTAGATCCACAGATGCTGTgtgcaaatgaataaaagataCGAACCCTGCTGATGCAAATCACATCTGGAAAAAACGTTTTCTATCTCCAAAAGCAAATAAACGATCTTTATTGCTCATTGTGGTTATGGAGAACATGGGAATGCTAGCTTTAAAGATCAAAGTTTTGGAATGCAGTACCAGAAATGTATGATTGCAGACCAAAAAAAGACTAGaagtttactgtttttgaagttttgttttctttttacatgttgttttatatgttttaactTGAATCTGTgctgctaaatgtttttttctaatttgagcCTTTGTGTGAGGCCAGAAGACCTGAGGTTATGTACCAATGcaagtttgtgtgtatttgtatgtgtgtgtgtgttctgaaatGAATATAAGTGTTGCAATGTGATTTAATTGCTTTATTCACTTAAGTGCAATATGATATTAAACATAACCCCTTATGGGAAATACAGATGTTAATAAGTCTGTACATTTCGCTGTTTTGGCTTGTTCgataaatattgcttttattttagccccaatattgttaatattgttcATACAAttacataaagtaaaataacaaataccaCAAGGACAATTTGACGATAAAAGCGATGCTCAAATACCTAAAATTCGTAATTATGTTGATCACAGGCCGAAACATTAAGCATTTGTTCATGCTGCATGTTTCACGTTTCGATTAAGTGTCAGTTCTgctcagaggtcagaggtcatttgTTTGCAGGTGCCATTTGGTGTGATATTTTGTATCTaacataattgtattttttaaagaaagcgtGGGTTAAGTGTCCAAATGGGGAAAAATCTCTGTTACTGTGATTCAACCACTAGAGGGCAGACAAACTCCAccaatgttttactgtttctcaTTCTTTACACAGGGTTAAGAATATTGTGTATGAACAACTTGAaaattgcattgatttttttacattccatttaagtatttacctttttttaaaatgttatacatCCAAGcaatttttgcatgtttaaaaaaataatgtccACTTACACAAGATAATGtcgtctttatttatttatttattaattctatGCCATGGCGGTCCCCTCTACTGACCAGCCCTAATGCTCGCTTTACCTCAGTACTATTGGTTGTAgaatatcttatatatatttttatcttgtg

Function

symbol description
hs6st3b Enables 3'-phosphoadenosine 5'-phosphosulfate binding activity; oligosaccharide binding activity; and sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural keel; forerunner cell group; immature eye; nervous system; and tail bud. Orthologous to human HS6ST3 (heparan sulfate 6-O-sulfotransferase 3).

NR:

description
PREDICTED: heparan-sulfate 6-O-sulfotransferase 3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K08103 HS6ST3; heparan sulfate 6-O-sulfotransferase HS6ST3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248207.1 True 5045 mRNA 0.42 2 9895081 9906181

Neighbor

gene id symbol gene type direction distance location
LOC122352127 il1rapl1,LOC107756873,LOC107677935,LOC107698784 coding upstream 10148 9838315 ~ 9884933 (+)
prmt2 prmt2 coding upstream 236706 9653656 ~ 9658375 (+)
LOC122351878 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding upstream 244172 9642697 ~ 9650909 (+)
LOC122351881 ugt1a2,LOC107663839,LOC107732349 coding upstream 254047 9639377 ~ 9641034 (+)
LOC122351879 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding upstream 255756 9637391 ~ 9639325 (+)
LOC122351484 LOC107663876,LOC107707766,LOC107724486,LOC107569399 coding downstream 87696 9993877 ~ 10006512 (+)
LOC122351208 LOC107663876,LOC107707766,LOC107724486,LOC107569399 coding downstream 101761 10007942 ~ 10022230 (+)
LOC122351209 LOC107748218 coding downstream 116512 10022693 ~ 10030552 (+)
chaf1b chaf1b,LOC107748217,LOC107663888,LOC107655528,LOC107720114,LOC107572528 coding downstream 124620 10030801 ~ 10038362 (+)
si:dkey-229b18.3 LOC107748215,LOC107663849,LOC107720115,LOC107655527,LOC107572534 coding downstream 135984 10042165 ~ 10051534 (+)
G69003 NA non-coding upstream 3501 9890651 ~ 9891580 (+)
G68908 NA non-coding upstream 319427 9575421 ~ 9575654 (+)
G68901 NA non-coding upstream 482346 9255332 ~ 9412735 (+)
G68900 NA non-coding upstream 653694 9240938 ~ 9241387 (+)
G68897 NA non-coding upstream 700778 9180904 ~ 9194303 (+)
G69028 NA non-coding downstream 149315 10055496 ~ 10056501 (+)
G69031 NA non-coding downstream 154877 10061058 ~ 10061611 (+)
G69032 NA non-coding downstream 155504 10061685 ~ 10061887 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding downstream 156027 10062208 ~ 10062436 (+)
G69034 NA non-coding downstream 164477 10070658 ~ 10070891 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 328084 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 734260 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 744988 9142592 ~ 9150093 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 1023448 8867097 ~ 8871633 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other upstream 1028776 8863387 ~ 8866305 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other downstream 186169 10092350 ~ 10113356 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 261155 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 422550 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 1115555 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1559423 11465604 ~ 11490149 (+)

Expression


Co-expression Network