vgll3 (LOC107561316)


Basic Information

Item Value
gene id vgll3
gene name LOC107561316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2926366 ~ 2930420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248229.1
ACGCTCCGTCCGTCTGTAGGCGGCGAAGCCTCGACGGGGacgcttttgtttttatgctaatattttcttttgcgAACCGCGGCGCTTTTGTCAACGCTCAGGTTTATATCGGGGGGGAATGATGGCAACGTTTATCCGCGGTTGAGGAAGCTGCCGTGTTCCTGAAGAGCCTCTCGAGATCGCCTGAGCCTCTGCCATGAGTTGTTTGGATGTTATGTATCATCAGAGTTATGGAGCTCATCACTACTTGCCCGCGACATCGGCAGCGGCAGCAGCGGCGGCTTACAAGGCGGCATATTACCACCATCAACAACATCaccatcagcagcagcagcagcagcagcagcagCAGAAGAAGTTCAGTGCCTACAGCAGGATGCAGGACTCTGAGGAGTTTCCGTCTCCCTGCGGCCAGAGTAAACCGTCTGGAGCGCTGAAGCCACGTCCTGAGCCTGAGCTTCCAGCGGAGGAGGCGCAGGGAAGAGGCGAAGAGGAGCGCTGCAAGGAGACGCAGCCGGCCGAGGCCGAGTACCTGAGTGCCAGGTGTGTGGTCTTCACCTACTTCAGAGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCGCGTGCCCTGAGCCAGCCCAGCGCCTTCAGCAACGACGCCAAGACCGGCAGACTTCCCTCCGGAGGGCCGTGGAAAGAAGGAAACCCCCACTCCGAGGGTCAAGCTTTAGCGTCGTCCCTGTGGGGCGGCAGCTACCCACCTCAGGCCGACTTCCCCCACACCGCTGGCTTCCACCCCGCCGACGCCGGCCTCTGGAGCGGCCACAGCCTGCCCCCTCCCTCCGCTCTGGCTGACTCCTGGCACTACGGCCTGGGAGCGCAGGGTGGGGCGGGATACCCCCACGTGCACGAGATGTACCCTCACGTGCGTCACGCTCACCCTCACACCCACCACGTGCTCCATCACGCCCACAGCCCCGCTCTGGACCCGCGCTTCAGCCCTCTTCTGCTGCCCGGGGTGAGAGCGTCGTGCAGCCCGCCGTCCTGTGCGGACGGGATCAAAACGGAGCTGGAGGCCGGCGGCATCCCGAGCTGGCCCGCCTCGTTCCACGGCTCGGTGGACATCTATCACGATGCAGTGCTCGAGCAAGACAAAGCGAAGGCCAGTGTTTGGTTCTGAGTCAGAGACGCTCGACTGGACTCCGTGCCCGAGACCGGACCACTTCTGCAGCGTGGAGCCCTTCTTCACAGGACTCTCTTGGGAACTATTCAGGGCATCGTCAGTCTCTACCAGTGAGACAAGCACAAAAACAGCTTCGTAAAGCATACCATCCTGTCTGAGCTCGTGCCCGCTCGTGGACCAGTTCAGGACGCTTCTGTAAAGAGCTGTTCAAGAGCTCTTTCTTCACACAAAGGAGGCTTTCTGGTGAAGGTTGATGCTTTATAGAACTGCGTTTCTGTACTTGCCGCAGGTTCTGTTGAAAGAACTGACTGTATTAGTACAGCAGGCGGAAACGCGTGAGAAGATCTtgatttactttaatatatttgtctTGTGACTTTACCG
>XM_043248230.1
ACGCTCCGTCCGTCTGTAGGCGGCGAAGCCTCGACGGGGacgcttttgtttttatgctaatattttcttttgcgAACCGCGGCGCTTTTGTCAACGCTCAGGTTTATATCGGGGGGGAATGATGGCAACGTTTATCCGCGGTTGAGGAAGCTGCCGTGTTCCTGAAGAGCCTCTCGAGATCGCCTGAGCCTCTGCCATGAGTTGTTTGGATGTTATGTATCATCAGAGTTATGGAGCTCATCACTACTTGCCCGCGACATCGGCAGCGGCAGCAGCGGCGGCTTACAAGGCGGCATATTACCACCATCAACAACATCaccatcagcagcagcagcagcagcagcagcagAAGAAGTTCAGTGCCTACAGCAGGATGCAGGACTCTGAGGAGTTTCCGTCTCCCTGCGGCCAGAGTAAACCGTCTGGAGCGCTGAAGCCACGTCCTGAGCCTGAGCTTCCAGCGGAGGAGGCGCAGGGAAGAGGCGAAGAGGAGCGCTGCAAGGAGACGCAGCCGGCCGAGGCCGAGTACCTGAGTGCCAGGTGTGTGGTCTTCACCTACTTCAGAGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCGCGTGCCCTGAGCCAGCCCAGCGCCTTCAGCAACGACGCCAAGACCGGCAGACTTCCCTCCGGAGGGCCGTGGAAAGAAGGAAACCCCCACTCCGAGGGTCAAGCTTTAGCGTCGTCCCTGTGGGGCGGCAGCTACCCACCTCAGGCCGACTTCCCCCACACCGCTGGCTTCCACCCCGCCGACGCCGGCCTCTGGAGCGGCCACAGCCTGCCCCCTCCCTCCGCTCTGGCTGACTCCTGGCACTACGGCCTGGGAGCGCAGGGTGGGGCGGGATACCCCCACGTGCACGAGATGTACCCTCACGTGCGTCACGCTCACCCTCACACCCACCACGTGCTCCATCACGCCCACAGCCCCGCTCTGGACCCGCGCTTCAGCCCTCTTCTGCTGCCCGGGGTGAGAGCGTCGTGCAGCCCGCCGTCCTGTGCGGACGGGATCAAAACGGAGCTGGAGGCCGGCGGCATCCCGAGCTGGCCCGCCTCGTTCCACGGCTCGGTGGACATCTATCACGATGCAGTGCTCGAGCAAGACAAAGCGAAGGCCAGTGTTTGGTTCTGAGTCAGAGACGCTCGACTGGACTCCGTGCCCGAGACCGGACCACTTCTGCAGCGTGGAGCCCTTCTTCACAGGACTCTCTTGGGAACTATTCAGGGCATCGTCAGTCTCTACCAGTGAGACAAGCACAAAAACAGCTTCGTAAAGCATACCATCCTGTCTGAGCTCGTGCCCGCTCGTGGACCAGTTCAGGACGCTTCTGTAAAGAGCTGTTCAAGAGCTCTTTCTTCACACAAAGGAGGCTTTCTGGTGAAGGTTGATGCTTTATAGAACTGCGTTTCTGTACTTGCCGCAGGTTCTGTTGAAAGAACTGACTGTATTAGTACAGCAGGCGGAAACGCGTGAGAAGATCTtgatttactttaatatatttgtctTGTGACTTTACCG
>XM_043248231.1
ACGCTCCGTCCGTCTGTAGGCGGCGAAGCCTCGACGGGGacgcttttgtttttatgctaatattttcttttgcgAACCGCGGCGCTTTTGTCAACGCTCAGGTTTATATCGGGGGGGAATGATGGCAACGTTTATCCGCGGTTGAGGAAGCTGCCGTGTTCCTGAAGAGCCTCTCGAGATCGCCTGAGCCTCTGCCATGAGTTGTTTGGATGTTATGTATCATCAGAGTTATGGAGCTCATCACTACTTGCCCGCGACATCGGCAGCGGCAGCAGCGGCGGCTTACAAGGCGGCATATTACCACCATCAACAACATCaccatcagcagcagcagcagcagcagcagcagCAGAAGAAGTTCAGTGCCTACAGCAGGATGCAGGACTCTGAGGAGTTTCCGTCTCCCTGCGGCCAGAGTAAACCGTCTGGAGCGCTGAAGCCACGTCCTGAGCCTGAGCTTCCAGCGGAGGAGGCGCAGGGAAGAGGCGAAGAGGAGCGCTGCAAGGAGACGCAGCCGGCCGAGGCCGAGTACCTGAGTGCCAGGTGTGTGGTCTTCACCTACTTCAGAGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCGCGTGCCCTGAGCCAGCCCAGCGCCTTCAGCAACGACGCCAAGACCGGCAGACTTCCCTCCGGAGGGCCGTGGAAAGGAAACCCCCACTCCGAGGGTCAAGCTTTAGCGTCGTCCCTGTGGGGCGGCAGCTACCCACCTCAGGCCGACTTCCCCCACACCGCTGGCTTCCACCCCGCCGACGCCGGCCTCTGGAGCGGCCACAGCCTGCCCCCTCCCTCCGCTCTGGCTGACTCCTGGCACTACGGCCTGGGAGCGCAGGGTGGGGCGGGATACCCCCACGTGCACGAGATGTACCCTCACGTGCGTCACGCTCACCCTCACACCCACCACGTGCTCCATCACGCCCACAGCCCCGCTCTGGACCCGCGCTTCAGCCCTCTTCTGCTGCCCGGGGTGAGAGCGTCGTGCAGCCCGCCGTCCTGTGCGGACGGGATCAAAACGGAGCTGGAGGCCGGCGGCATCCCGAGCTGGCCCGCCTCGTTCCACGGCTCGGTGGACATCTATCACGATGCAGTGCTCGAGCAAGACAAAGCGAAGGCCAGTGTTTGGTTCTGAGTCAGAGACGCTCGACTGGACTCCGTGCCCGAGACCGGACCACTTCTGCAGCGTGGAGCCCTTCTTCACAGGACTCTCTTGGGAACTATTCAGGGCATCGTCAGTCTCTACCAGTGAGACAAGCACAAAAACAGCTTCGTAAAGCATACCATCCTGTCTGAGCTCGTGCCCGCTCGTGGACCAGTTCAGGACGCTTCTGTAAAGAGCTGTTCAAGAGCTCTTTCTTCACACAAAGGAGGCTTTCTGGTGAAGGTTGATGCTTTATAGAACTGCGTTTCTGTACTTGCCGCAGGTTCTGTTGAAAGAACTGACTGTATTAGTACAGCAGGCGGAAACGCGTGAGAAGATCTtgatttactttaatatatttgtctTGTGACTTTACCG
>XM_043248232.1
ACGCTCCGTCCGTCTGTAGGCGGCGAAGCCTCGACGGGGacgcttttgtttttatgctaatattttcttttgcgAACCGCGGCGCTTTTGTCAACGCTCAGGTTTATATCGGGGGGGAATGATGGCAACGTTTATCCGCGGTTGAGGAAGCTGCCGTGTTCCTGAAGAGCCTCTCGAGATCGCCTGAGCCTCTGCCATGAGTTGTTTGGATGTTATGTATCATCAGAGTTATGGAGCTCATCACTACTTGCCCGCGACATCGGCAGCGGCAGCAGCGGCGGCTTACAAGGCGGCATATTACCACCATCAACAACATCaccatcagcagcagcagcagcagcagcagcagAAGTTCAGTGCCTACAGCAGGATGCAGGACTCTGAGGAGTTTCCGTCTCCCTGCGGCCAGAGTAAACCGTCTGGAGCGCTGAAGCCACGTCCTGAGCCTGAGCTTCCAGCGGAGGAGGCGCAGGGAAGAGGCGAAGAGGAGCGCTGCAAGGAGACGCAGCCGGCCGAGGCCGAGTACCTGAGTGCCAGGTGTGTGGTCTTCACCTACTTCAGAGGAGACATCGGGGATGTGGTGGACGAGCATTTCTCGCGTGCCCTGAGCCAGCCCAGCGCCTTCAGCAACGACGCCAAGACCGGCAGACTTCCCTCCGGAGGGCCGTGGAAAGAAGGAAACCCCCACTCCGAGGGTCAAGCTTTAGCGTCGTCCCTGTGGGGCGGCAGCTACCCACCTCAGGCCGACTTCCCCCACACCGCTGGCTTCCACCCCGCCGACGCCGGCCTCTGGAGCGGCCACAGCCTGCCCCCTCCCTCCGCTCTGGCTGACTCCTGGCACTACGGCCTGGGAGCGCAGGGTGGGGCGGGATACCCCCACGTGCACGAGATGTACCCTCACGTGCGTCACGCTCACCCTCACACCCACCACGTGCTCCATCACGCCCACAGCCCCGCTCTGGACCCGCGCTTCAGCCCTCTTCTGCTGCCCGGGGTGAGAGCGTCGTGCAGCCCGCCGTCCTGTGCGGACGGGATCAAAACGGAGCTGGAGGCCGGCGGCATCCCGAGCTGGCCCGCCTCGTTCCACGGCTCGGTGGACATCTATCACGATGCAGTGCTCGAGCAAGACAAAGCGAAGGCCAGTGTTTGGTTCTGAGTCAGAGACGCTCGACTGGACTCCGTGCCCGAGACCGGACCACTTCTGCAGCGTGGAGCCCTTCTTCACAGGACTCTCTTGGGAACTATTCAGGGCATCGTCAGTCTCTACCAGTGAGACAAGCACAAAAACAGCTTCGTAAAGCATACCATCCTGTCTGAGCTCGTGCCCGCTCGTGGACCAGTTCAGGACGCTTCTGTAAAGAGCTGTTCAAGAGCTCTTTCTTCACACAAAGGAGGCTTTCTGGTGAAGGTTGATGCTTTATAGAACTGCGTTTCTGTACTTGCCGCAGGTTCTGTTGAAAGAACTGACTGTATTAGTACAGCAGGCGGAAACGCGTGAGAAGATCTtgatttactttaatatatttgtctTGTGACTTTACCG

Function

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248229.1 True 1549 mRNA 0.59 4 2926366 2930420
XM_043248230.1 False 1546 mRNA 0.59 4 2926366 2930420
XM_043248231.1 False 1546 mRNA 0.59 4 2926366 2930420
XM_043248232.1 False 1543 mRNA 0.59 4 2926366 2930420

Neighbor

gene id symbol gene type direction distance location
pou1f1 pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978 coding upstream 18233 2899163 ~ 2908133 (+)
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding upstream 427068 2494481 ~ 2499298 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding upstream 667751 2254557 ~ 2258615 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding upstream 724652 2145505 ~ 2201714 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding upstream 1060759 1861809 ~ 1865607 (+)
kctd4 kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 coding downstream 35626 2966046 ~ 2967965 (+)
tsc22d1 tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 coding downstream 47887 2978307 ~ 3016509 (+)
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding downstream 123942 3054362 ~ 3137945 (+)
epsti1 epsti1,LOC107549908 coding downstream 433314 3363734 ~ 3384177 (+)
vwa8 vwa8 coding downstream 577505 3507925 ~ 3584691 (+)
LOC122351269 NA non-coding upstream 1730 2917842 ~ 2924636 (+)
G67187 NA non-coding upstream 271890 2641619 ~ 2654476 (+)
G67097 NA non-coding upstream 793970 2131962 ~ 2132396 (+)
G67065 NA non-coding upstream 839561 2086282 ~ 2086805 (+)
LOC122351283 NA non-coding upstream 840188 2083592 ~ 2086178 (+)
LOC122351258 NA non-coding downstream 24924 2955344 ~ 2957198 (+)
G67296 NA non-coding downstream 122074 3052494 ~ 3053222 (+)
G67347 NA non-coding downstream 455210 3385630 ~ 3385950 (+)
G67348 NA non-coding downstream 456552 3386972 ~ 3387192 (+)
G67389 NA non-coding downstream 488667 3419087 ~ 3424421 (+)
bpifcl bpi other upstream 1190046 1713812 ~ 1736320 (+)
G66795 NA other upstream 1791377 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2026987 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 2121357 797133 ~ 805009 (+)
G66657 NA other upstream 2464337 459574 ~ 462029 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 264353 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 332187 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 983218 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 1017616 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 1050926 3981346 ~ 3985962 (+)

Expression


Co-expression Network