gtpbp8 (si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183)


Basic Information

Item Value
gene id gtpbp8
gene name si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11400551 ~ 11404296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248236.1
GCTTTCTTTAAacgtttgtttacataaatgtattacttCACTAGTGTAATAGTATTTATCATTGTGCTTTCGGAATTAACCAGTTCATTTCGGGCTGTAAAAgatttttataaactttaatTCTAATCAATTTAAGATGACATTGCTTGCAGTAAGATGTTAGACGTACGTTTTATGAGTAAAACGTCTTAAAACGTAGCGAAAGGCAGCACATGTatggtaaatgtttatttgtataatgatttaaatgctGATTGACTGGCATCTGTATTATGTGAAGACACAGGACCCAAGTGGATGGACATGAACCATAATATTCAATTCATTAAATCTTAGAAAGATTAACTTTTCCGAAACCGTCAAGCAAGCCCTCTTGAATTCAACATCCCATTTACTGCATGAATCAATCAGTGTATCCCAAAACTGACTTCAGTGAGGCAAAATTGTTATACTGAGAGAACTGATCTAACAATGCTGAGGATAAAGGCATTGCCTCTACTGCAGACACATATAGCAGGTTGTTCTTTGGTATCTCAGTGCGTTCATCAGCTGGCCTCCATCAAACACGTGTGTGTGCTCCCCGAGAGGAGGCGCCAGGCTCTCCTGTACCCCTTTAACAGTCTGAAGGAGCACCTGTCCTCACAGGTCAGCCAGGAAGAATTCAAGATCTTTCATCCCAGCTTGGAGGAACTCCGTCAGGCCGAGACGCTGTTCACTCCCTCCTCTAAACATAGCATTGACTACTCTACTTCTGCGGTCCGTTTAGACAATGTGCCTCTTCTTAAACAGCCAGAGGTGTGTTTTATGGGCAGAAGTAATGTGGGAAAATCTTCTCTCATCCGTGCCTTATTCTCTCTTGTGCCGGAGGTAGACGTGCGGGTCTCTAAAACTCCGGGCCACActaaaaagctgaatttcttCACTGTGGGAAAGGCCTTTACTCTTGTAGACATGCCAGGGTACGGACACAAGGCCCCACGGGACTTTGTAGAAATGGTTGAACCTTACCTTCTAGATCATCAGAATCTGGTGAGGACGTTCTTGCTTGTGGATGGAGGTGCAGGTCTGCAGAAGGCAGATTTAGTTGCTGTGGAGATGTGTGAGGAGTTCAATTTACCTTATGTGCTGGTGGTAACTAAAATAGACAGAACCCGACAGGGTGCTTTGTTGGCTCTTGCTCTACAGCTTCGGGACTTTATCAAAAGTCAAACCAGCACGTGCTTCCCACAGCCATTTCTAATAAGTTCAATCCAGTTCTCCGGGATTCATCTGCTCAGGTGTTTCATAGCACATGTAACGGGAAATCTACAGCTCAACGCTAAACAGTCATGAGTTTACTGTCTTTCCACATGTCACAAACACAAACCTGAGGTCTGGACCCAGTGTCATAAAACCAATTTGAAAATGACTGATCTGAACCGTTTAATTACTGaatctatgtatttattattttcataataatacagAGTCTGGAATCACAATATTACTGGTTTCAGAATTCATCCAGCTCTCCATAAACTCTCTGAATGATCCAGAAATCAAgtgtatgatttaaaaatatttatattttaggttATACTGCAAATGACTGTCTGTTGCTGTATAGTCAAGTGGAATATttgttcttcaaaataaaatgacaaagtgTTGCTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248236.1 True 1657 mRNA 0.41 6 11400551 11404296

Neighbor

gene id symbol gene type direction distance location
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding downstream 3888 11392240 ~ 11396663 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding downstream 11173 11386377 ~ 11389378 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding downstream 168863 11225956 ~ 11231688 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding downstream 183897 11210200 ~ 11216654 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding downstream 195583 11193693 ~ 11204968 (-)
LOC122352021 hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 49773 11454069 ~ 11464414 (-)
efnb2a efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709 coding upstream 578672 11982968 ~ 12000692 (-)
arglu1a arglu1a,LOC107555859,LOC107673121,LOC107711396,LOC107577473,LOC107675355,LOC106586866 coding upstream 599708 12004004 ~ 12009937 (-)
zeb2a zeb2a,LOC107711399,LOC107675348,LOC107563183 coding upstream 792458 12196754 ~ 12244788 (-)
itm2bb itm2bb,itm2b,LOC107673124,LOC107709423,LOC107601060 coding upstream 1041256 12445552 ~ 12452338 (-)
G69467 NA non-coding downstream 34732 11358950 ~ 11365819 (-)
G69396 NA non-coding downstream 370058 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 446566 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 453807 10930480 ~ 10946744 (-)
LOC122351998 NA non-coding upstream 386485 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 681418 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 863816 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 875497 12279793 ~ 12280197 (-)
LOC122351337 NA non-coding upstream 899418 12303714 ~ 12321820 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 713924 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 881094 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 956932 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1490373 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3305704 8076468 ~ 8094847 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 92651 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 686835 12091131 ~ 12194961 (-)
G69650 NA other upstream 1018133 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1113988 12518284 ~ 12582425 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other upstream 1303680 12707976 ~ 12720690 (-)

Expression


Co-expression Network