klf5b (klf5,LOC107740910,LOC107668908,LOC107720143)


Basic Information

Item Value
gene id klf5b
gene name klf5,LOC107740910,LOC107668908,LOC107720143
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15001464 ~ 15006670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248244.1
TGACAGTGTTAcctaatataattttacagcagtaagtcatttttaacagtttttttaaccGTATCCCACCTTTTAGGCCtactaataatgataataataattattatttgattataattatttatttcgtGTTTTGTATTATACAAAATCTTTTTTCGTCACTGCTGCTGGAGTTTTGCGACCGTTTAGGTTACATCTGTGGTTTCCTAAGTATATTTCAcgctgattaatattttaatagctaAAACGTGTTATATCTGAATAGTGATTCAACGGCATATACATCACTAAAACATGTGACACCAAAAACATCTGAATTTGTATGGTAAAGTTCTGGCATTTACGACAGCCAGTTTTAATAATAGgctataaatcttttttttatttattaaagtgcaTTCCCATgcttgttagtttttttttctttggaagaCTATTGCATCTCCTGCAAACCTGTTTGGgtgaattattaaatgtatgatGACAAAGCCCCGCCCCATTTTGAGGCATTGAAACGAGGCAGTTGCGTAATTTGTCTTGTCAAACGCGTAAAGCGCTTGACATCTCGGTCTGGCTGTCGTGTCGTTCTCATTTGCGGCATATTGAATGACGTGATCTCCAGCTTATTTCAGCAGAGGACATGCGGTTATGGGCAACGCTTTGTTGAGCGGGATCCACGGCTAGAATAAAACACCTCTAAGAACTGAACGAGGCATTGAGAGAGGACGATTACAGTGGATTTAATGACACTCCATCAAAGCATCACATTCTGATCAAAAGAGACATGGATGGATACCTGCCGCCTCAGTTTCACACATTGTCAGACCATAAGAAGTTTTGTCAAGACAATTCCCTCACGATGGACCAAGGCACGCCATACAGCATaaacatgaatgtttttttaccGGATGTCACCTACCTACGGACCGGCATGTGTAGACCCGTGAGGTCCGGGGCGCCACAGATAAAGACAGAACCTCTGCATTCGTCTTTCAACTATTCTAGTTGCCACGGCTCGGTTGCGCCCACCATTACGCACCCAGAATACACAAACCTCTACAGCCCAGCTGCGGAAACGGGTAGCAATGTTTACGTCAAGCACGAGCAGCCGTCCCTCGAATTCCCAGACGTTCCACTTTTTCAGCTGTTAAATTCGGAGCTCGAGCCCAATGGTGGCCATCCTTGCACAGATCCCCACAATGCCACATGCCCTCCGATGCCGACGTATAACGGCATTCACACACACCCCGGCCAGATTGCAGAACGACCGCATTGTAATATGAGCAACAGTGGATATTCGCTACCTACCCAGTTTGGTCAGCATTCTCAGAAGAGAGCGGCCTATCTACCACCCTCCCCTCCAAACTCAGAACCCGGCAGCCCAGACAGGAGGAAAGAACTCATACAGAACTTGTCGCCACCTCCGTCCTATGCCGCTAGCATGGCATCTAAAATGGCAGGTCTCAGCCCTGGACCGGCGCTTTCTGTCCAAACGCAAGCAGTACCTGCCCAGTACAACCGCAGAAACAATCCGGATCTCGACAAAAGGAGAATACATCACTGCGATGTACCAGGATGTAAGAAGGTCTACACCAAGTCCTCACATTTGAAGGCCCATTTACGTACTCACACGGGCGAAAAGCCATACAAGTGCTCGTGGGAGGGGTGCGACTGGCGATTTGCCCGCTCTGACGAGCTAACGCGCCACTTCAGGAAGCACACGGGGGCCAAACCTTTCCAGTGCGCCGTATGTAGCCGTTGCTTCTCCCGATCGGACCACCTGGCCCTCCACATGAAAAGACACCAGAACTAGAGCCGCCCGCTCTCGTTGTTCTGACGGTGCCGCGGGAGGGCTATCAGGACCTCTGTTGATGATACTAATTAGGATTTGGGTGTGTTGGTTAATCTTGGGTTTTGGCAGTTCATCAGGTACAACAGGACCAAACCCTGCCGTCGGTACGGCTCCTGTGGTCACAAAACCAGCTAATTGATGAGAACTTGGCTCATTTGCCAGATGGGACattctttttgacatttttgtttgtttctttgtttgtctgCATACTTTGAGGTATGACGTAACTACTTTTAATGTGCCTTTTTTACCTTGTAGAATGGAGATGCCATGTAAAATGTACAACGTTCAAGAACTCGTGGGCAGTTTTAATCTTCTTTAAAGCAATATTCCTGATTTAATACAAGTTAAGACTAATCCACTGATCGCATAATGTTGATCATCATCCATCTTGTGGCAACGTGgttgaaaaattttaaatgttaacgtTTACAAGATTGGCTCCATTGACTTCCGTCGTAACCTAGATTTTGGAAGTTGATATGAATTACGGTAATCAACATTATGCCACATGTTCTGTCAACTGAGCTTAACTTTTACTGAACCCAGAATATTCTTGTAAATGACTACTCATACTTGTATCACAAGGTAAATCATAAAATGCGCTGCAGTTTTGGTTGCAGAACCAAACTGCAGAACAGTCATGAGAATGTGAGCTACAAACGCTGAGTCACAATGAATTAATGTCTCTTAAAAGCAGCACTTGATAAGAAACAGCTTCAGAAATTTGTGTGGGAGCCACCGGttaattagaaaattaaatgtagctTCAGAACACCAAAGAGTTGGACAAAGTCCAAACTATGATATGTTTTGAGGGGATTTGCTTCATGTAGGCAAAATGTTTGAAAGAGCACAATCTGAAGATTGATTGAACTCCTTTATGTtaatttctgtgttttactGAAATGCAATAAGTGGTACAAATCGATTACATATCGATTACTTCCATAGTTGTTTATTTTCCTTACTATGCATTTGGTTGGGATAAGCGATAgctttaaatgtacatataacgtgtatttattttgcacagattatttttttttaatttctattttataaaacGTAACTCGGCGCTTACATGAAATGTGCAATGGGTTGCTGGGAAGTGGTTTTCGAAATCTTTGTTCAAACTAATAGTGCTCTAAATGGCCGCATTATGTGGAACAATGTGGCAGCTGATTGTTTACATTAGTTGGTTTGGCTTATGGTGTGTGTTACATCTGTATGTGTGGCCCCATAAAACCTCTTATTTTCCATTA

Function

symbol description
klf5 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cell-cell signaling via exosome and positive regulation of pri-miRNA transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248244.1 True 3120 mRNA 0.42 4 15001464 15006670

Neighbor

gene id symbol gene type direction distance location
morc3a morc3a,LOC107569945,LOC107724492 coding downstream 103339 14884111 ~ 14898125 (-)
vtcn1 vtcn1,LOC107712252 coding downstream 123808 14875492 ~ 14877656 (-)
trim45 trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366 coding downstream 126772 14868759 ~ 14874692 (-)
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding downstream 139372 14795431 ~ 14862092 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding downstream 212174 14783457 ~ 14789290 (-)
gpr18 LOC107740919,LOC107681324,LOC107668869,LOC107748622,LOC107600424,LOC107570094 coding upstream 150434 15157104 ~ 15161278 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding upstream 157629 15164299 ~ 15170670 (-)
si:ch211-184m13.4 LOC107668872,LOC107748619,LOC107569521,LOC107740921,LOC107600422,LOC107681312 coding upstream 172804 15179474 ~ 15181677 (-)
zic5 zic5,LOC107569541,LOC107694589,LOC107740913,LOC107748614,LOC107681322,LOC107600378 coding upstream 257209 15263879 ~ 15267519 (-)
nalcn nalcn coding upstream 418777 15425447 ~ 15490245 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding downstream 19611 14975412 ~ 14981853 (-)
LOC122352110 NA non-coding downstream 58601 14937124 ~ 14942863 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding downstream 82624 14916800 ~ 14918840 (-)
G70396 NA non-coding downstream 406122 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 411189 14589858 ~ 14590275 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 6687 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 28149 15034819 ~ 15041730 (-)
LOC122351294 NA non-coding upstream 250318 15256988 ~ 15262676 (-)
G70581 NA non-coding upstream 412329 15418999 ~ 15421577 (-)
LOC122351574 NA non-coding upstream 622213 15628883 ~ 15638436 (-)
LOC122351495 NA other downstream 628790 14359646 ~ 14372674 (-)
G70317 NA other downstream 747688 14196479 ~ 14253776 (-)
G70294 NA other downstream 1061596 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 1088521 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 1188137 13807822 ~ 13813327 (-)
G70549 NA other upstream 296433 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 382548 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 764751 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1714134 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1810470 16817140 ~ 16823775 (-)

Expression


Co-expression Network