agr1 (agr1,LOC107718316,LOC107692342,LOC107601372,LOC107754004,LOC107695966,LOC107560612)


Basic Information

Item Value
gene id agr1
gene name agr1,LOC107718316,LOC107692342,LOC107601372,LOC107754004,LOC107695966,LOC107560612
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22902448 ~ 22906312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248246.1
CCTGTTTGGGAGGTTACACATAGTGTGACTATAAAAATGCCTGTGATACAGAGTAGTAGTTGCTGTCGGCTTGAAGAGAGGGACGGTAAATCTGGTTCACCTGTTTCACTTCggGACACATGACAGGTACAGTCATGCAGCGCTGGATGATCTGCGTAACGCTTTTGTTTCTCGTGTTCTGTGATGTCTCCactcaaaggaaaaaaaagacagtccAGACTTTATCGAGAGgttggGGTGATGACATCACTTGGGTTCAGACGTATGAAGAAGGACTGACCAAAGCGGTTGAAAGTAAGAAGCCCCTGATGATCATTCATCATTTGGAGGATTGTCCACACAGTAAAGcTCTGAAAAAGGCTTTTGCTGAACACCAAGCTATTCAAAGGCTGGCTAAATCAGATTTCATCATGCTCAATTTAGTGCATGAGACCACCGACACTCATTTGGCCCCCGATGGCTTCTATGTCCCCAGGATCATGTTTGTTGACCCATCACTGACTGTGCGGGCTGACATTGCTGGAAAATACGCCAACCGAATGTACGCGTACGAGCCGAGCGACGTGGACTTCTTGGCGGAGAACATGATAAAAGCCAAGATCCTGCTCAACGCCGAACACGAGGATCATGATGATCTGTGACGGACGACAGCTACCCTTTTTCAAGACTCGTACGCAATATACAGGTTTCTTTGTGCAACTGGCAGTATTTCGCTTTAAATAAAGCCTGTCGGTTGTA

Function

symbol description
agr1 Acts upstream of or within fin regeneration. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including EVL; digestive system; fin; oral epithelium; and sensory system. Orthologous to human AGR3 (anterior gradient 3, protein disulphide isomerase family member).

NR:

description
anterior gradient protein 3-like

GO: NA

KEGG:

id description
K20357 AGR3; anterior gradient protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248246.1 True 738 mRNA 0.47 8 22902448 22906312

Neighbor

gene id symbol gene type direction distance location
itgb2 LOC107699026,LOC107739438,LOC107601382,LOC107676087,LOC107601617,LOC107755371 coding downstream 256701 22636895 ~ 22645747 (-)
vil1 vil1,LOC107699006,LOC107676071,LOC107755365,LOC107601613,LOC107739444 coding downstream 266451 22622058 ~ 22635997 (-)
LOC122351761 LOC107601373,LOC107755372,LOC107739445,LOC107601614,LOC107601364,LOC107739440 coding downstream 281660 22616864 ~ 22620788 (-)
LOC122351760 LOC107755372 coding downstream 286667 22611358 ~ 22615781 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding downstream 292379 22597828 ~ 22610069 (-)
hdac4 hdac4,LOC107560613,LOC107601379,LOC107741589 coding upstream 99526 23005838 ~ 23244247 (-)
LOC122352042 LOC107704822,LOC107739717,LOC107688954,LOC107601359,LOC107741586,LOC107601360 coding upstream 375202 23281514 ~ 23290139 (-)
LOC122351748 LOC107601359,LOC107704822,LOC107741586,LOC107739717,LOC107688954,LOC107601360 coding upstream 484380 23390692 ~ 23410990 (-)
gjc4b cx43.4,LOC107704825,LOC107741582,LOC107601378,LOC107688946,LOC107739588 coding upstream 512950 23419262 ~ 23426434 (-)
LOC122352061 igfbp5b,LOC107656526,LOC107719877,LOC107601375,LOC107739616,LOC107567302 coding upstream 658067 23564379 ~ 23649560 (-)
G72646 NA non-coding downstream 10829 22828098 ~ 22891619 (-)
G72615 NA non-coding downstream 201429 22700729 ~ 22701019 (-)
G72608 NA non-coding downstream 235337 22666897 ~ 22667111 (-)
G72603 LOC107739437,LOC107699030,LOC107601381,LOC107676090,LOC107755369,LOC107755357 non-coding downstream 243620 22658317 ~ 22658828 (-)
G72605 NA non-coding downstream 248873 22652502 ~ 22653575 (-)
G72780 NA non-coding upstream 35503 22941815 ~ 22942016 (-)
G72795 NA non-coding upstream 97085 23003397 ~ 23003740 (-)
G72803 NA non-coding upstream 349766 23256078 ~ 23277786 (-)
G72808 NA non-coding upstream 362009 23268321 ~ 23268764 (-)
G72809 NA non-coding upstream 364782 23271094 ~ 23271519 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 391141 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 678781 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 1175628 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 2398558 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 3009133 19881550 ~ 19893315 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1023895 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1037673 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1314210 24220522 ~ 24280708 (-)
G73201 NA other upstream 2121273 25027585 ~ 25030965 (-)
G73301 NA other upstream 2442466 25348778 ~ 25349640 (-)

Expression


Co-expression Network