mstnb (LOC107728928,LOC107602146,LOC107660602,LOC107657539)


Basic Information

Item Value
gene id mstnb
gene name LOC107728928,LOC107602146,LOC107660602,LOC107657539
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19673260 ~ 19676836 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248251.1
CATGACATCTACTTGTCCGGTGCGTGGTGAGGTTCATTTCCATAGCATATCAGATCAAACATCGCAAACATCCTTTAGCACGCTTTGGAACATGCATTTTACACAGGTTTTAATTTCTCTAAGTGTATTAATTGCATGCGGTTCAGTGGGTCATGGAGATATAACGGCGCACCAGCAGCCTTCCACAGCCACGGAGGAAAGCGAGCAGTGTTCCACATGTGAGTTCAGACAACACAGCAAGCTGATGAGACTGCATGCCATCAAGTCCCAAATTCTTAGCAAACTCCGACTCAAACAGGCTCCAAATATTAGCCGGGACGTGGTCAAGCAGCTGTTACCCAAAGCACCGCCTTTGCAACAACTTCTGGATCAGTACGATGTTCTGGGGGATGACAGTAAGGATGGAGCTATGGAAGAGGATGATGAACATGCCACCACAGAGACCATCATGACCATGGCCACAGAGCctgaccCCATCGTTCAAGTAGATCGGAAACCGAAGTGTTGTTTTTTCTCCTTCAGTCCGAAGATCCAAGCGAACCGGATCGTGAGAGCACAGCTCTGGGTTCATCTTAGACCGGCAGAAGAAGCGACCACCGTCTTCTTACAGATATCACGGCTGATGCCCGTCACGGACGGAGGAAGGCACATACGAATACGATCCCTGAAGATCGACGTGAATGCAGGAGTGACGTCTTGGCAGAGTATAGACGTAAAACAGGTGCTCACGGTGTGGTTAAGACAACCGGAGACCAACTGGGGCATTGAGATAAACGCGTATGACGCGAAGGGAAACGACTTGGCCGTCACCTCAGCTGAGCCTGGAGAGGATGGTCTGCTCCCCTTCATGGAGGTGAAAATCTCAGAGGGCCCAAAGCGAATCCGGAGGGACTCTGGCCTGGACTGCGACGAGAATTCGTCAGAGTCTCGATGCTGCAGGTACCCTCTCACTGTGGACTTCGAGGACTTTGGCTGGGACTGGATTATTGCTCCAAAACGCTACAAGGCGAATTACTGTTCGGGAGAATGCGACTACATGCACCTGCAGAAATATCCCCACACCCATCTGGTGAACAAGGCCAATCCGCGAGGCACCGCAGGGCCCTGCTGCACCCCCACCAAGATGTCTCCCATCAACATGCTCTACTTCAACGGCAAAGAGCAGATCATCTATGGCAAGATCCCCTCAATGGTAGTAGACCGCTGTGGCTGCTCGTGAACCAGTGCCCAGACAGGACTCGATCCGTCTCGCAGACCCGGACATCTGATCACACCATCCACCATCCATTATCAGTGCTTTCCGCAAGACACTGTGCAATAGAAGGACGCTCACTCACTCTCTGGGCACCGCTTCATTTGACTatattgttttgtcattttcctCTAAATCAGTATCTCTGCCACAGGAGTCCAATGTTACATGGATGTACTAAAGGAATGTCATAAACTGGCTGGACTTGGGAATGGACACTTTTGAAATGGACGACATTCTCtgctttatttcatgttttcaccTTGTCAGAATACTCTCATTAGGATACGCAGACAACATTGTATTATGCAACCACTCCAAAATACAATCATTTAGATCTTTGCTGTAACAGCTGAGCTTGTTTAAGAAGAGTATccaagagaaacagagagggaCTCTTGAACATTGAACAGAGCTTGAATACAGTTATCTGAAGCAAACTTCCACATACACTGCAATAAACACACCGATCAAATTGTTAATCGTAGCTTTCGTCCACTACTCATCTGTCAAACAGCCCTACACACTTGAAGTATTATTGAGATCGGCATTAAGGGACAGAAGGACTTGAAGCAAAGGCGCTGTGAATGCggtttatacattaaaatgtgttcGAGACAGAGACATCGGAACTGTAAGAATGAATGTTAATATCACGCTAACACTCTGTCTTCAAACCACACAGTTTGCACTATGGCAGACCAATAGAAAGAATTGGTTgctaaaaatgttgtaaaaactgattttgatATGTTTGCTAATTGTATTGTATACTTGCCATTGTTTCCATTAACAGTTGCCTTTTTTAACCACGGTTAGTACATGTATATGAACACGAAATAGCAAAAAAGTGTACAATATAAATCTATGTATCTgttcaaacaaataaaggtgCTTGCTTTATA

Function

NR:

description
myostatin 1 precursor

GO: NA

KEGG:

id description
K05497 MSTN, GDF8; growth differentiation factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248251.1 True 2157 mRNA 0.46 3 19673260 19676836

Neighbor

gene id symbol gene type direction distance location
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding upstream 6647 19643049 ~ 19666613 (+)
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 788935 18793081 ~ 18884325 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding upstream 881894 18773760 ~ 18791366 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding upstream 901521 18760460 ~ 18771739 (+)
slc12a8 slc12a8,LOC107741923,LOC107660618,LOC107673744,LOC107714115,LOC107555904 coding upstream 912994 18742810 ~ 18760266 (+)
osgepl1 osgepl1,LOC107660598 coding downstream 40426 19717262 ~ 19720435 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding downstream 55519 19732355 ~ 19733971 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 64804 19741640 ~ 19748311 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 89827 19766663 ~ 19778896 (+)
stat1b stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020 coding downstream 104827 19781663 ~ 19790963 (+)
G71586 NA non-coding upstream 38413 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 52784 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 66059 19606985 ~ 19607201 (+)
G71517 NA non-coding upstream 417027 19256030 ~ 19256233 (+)
G71509 NA non-coding upstream 422103 19250839 ~ 19251157 (+)
G71627 NA non-coding downstream 74746 19751582 ~ 19752090 (+)
G71628 NA non-coding downstream 75472 19752308 ~ 19752693 (+)
G71630 NA non-coding downstream 76394 19753230 ~ 19753756 (+)
G71629 NA non-coding downstream 77688 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 79030 19755866 ~ 19756178 (+)
G71585 NA other upstream 51767 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 129583 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 741798 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 983718 18682672 ~ 18689542 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 1030774 18635106 ~ 18642486 (+)
ormdl1 ormdl1,LOC107602148 other downstream 32528 19709364 ~ 19714404 (+)
si:dkey-10c21.1 NA other downstream 536559 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 671991 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 748165 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 760322 20437158 ~ 20764175 (+)

Expression


Co-expression Network