hibch (hibch,LOC107660603,LOC107714371,LOC107741945)


Basic Information

Item Value
gene id hibch
gene name hibch,LOC107660603,LOC107714371,LOC107741945
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19643049 ~ 19666613 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248252.1
GATTTCCTCGGTGGTGTCGCTCCATCGTGACATCATGAAGCAGGGCCGAAGAGCACTGGAGACAGGGTGAAGCCTCCcgtgtgtaacagtgatccagaaCATCGGCTGAACTCTTAGTTGTAGCCATGTCATTAATAAGCTTAACGTCTGCGCACAGATTACGATCAGTCTACAGATTGCAGAGAATACAAGGACACATGATGTCCAGTAAAGCCGTGTCTGAGGTTCTGTTTGAGAAAGTTGGGAACACTGGAGTCATCACACTAAACAGACCCAAAGCTCTCAATGCTTTCACTCTCACCATGATCAGACAAATTCAACCTCAGCTCAAGAAATGGGACAAAGATTCAGAAACAGACCTGGTGATCATTAAAGGAGCGGGAGAGAAGGCATTCTGTGCTGGGGGAGACATCAGAGCTATCACAGAAGCTAGAAAAGCAGACGATTCTTTTACTCAAATCTTCTTCCGTGAGGAATATATTCTTAACAACGCTATTGCTACGTATAAGAAACCCTTTGTGGCTCTAATTGATGGAATTACAATGGGAGGAggtGTGGGTATTTCAGTTCATGGACGGTTTCGTGTTGCCACTGAGAAGACACTGTTTGCCATGCCAGAGACGGGCATTGGTTTGTTCCCTGATGTTGGTGGCGGCTACTTCCTACCTAGACTTAAAGGCAAACTAGGCCTTTTTCTTGGCCTGACTGGGTTCCGCCTCAAAGGGAGAGATGTTCAGAGGGTCGGGTTGGCTACTCACTTTGTGCAGTCCGACAAGATTGCGTCTCTTGAGAAGGATCTTGTTGATCTGAAGTCTCCGTCGGACAGTGATGTGGTTCAACTGCTGGATTCTTATCAACAACAGAGCAATCTGGATGCTGAGAAACCTTTTGTACTTCAAGAACAGACAGAGGCCATCGACAGGCTCTTTTCAGCTGGAAGTATGGAGGAGATCATGGAGAACCTAAAGAAAGATGGCTCTGCTTTTGCACTCAAACAGATTGAGACTCTGGCCAAAATGTCCCCAACCTCTCTGAAGTTAACTTTCAGGCAGATTCAGGACGGAGCGAGAATGAGTTTGCAGGAGGTGTTGGTGATGGAGTATAGACTCAGTCAAGCCTGTATGAGAGGCCACGATTTTTTTGAGGGAGTCAGGGCAGTGCTAATCGATAAAGACCACAGTCCAAAGTGGAAACCTTCTACCCTGTCTGAGGTCTCCGAGCAGGCTATAGAAGAATGTTTCAGCTCTCTAGGTGAAAGAGATCTCAAACTATAGAAATTCCACTCAAAAATCCTATAAGTTGCTTTCACAAACCTCTGAAATTTATCAAAGAAATCTGCATTGTTATTTCTATCAGTATAGCTGACGTATGCAAAAATAATCTTGATGCTTGCAGCTGAAGCAAACGTTCCTCTGAGACTATGGGGTTCTACTGATCCTTGTGATGAAATGAACAATGCTAGTTTCTTACagaaattgcattttctttgtCCCATTACCCTGGGAAATGGCATTTAGAGTAAGCTAACAACTGAGAGAAGTCTAGTCATATTTTAAAGGTAAAGTTCTtccataaatgaaaattttgtaatttacaacttcttttaatattacaatgcaGGTCTTTCCCGCAAAATAACATCAAAGACTTTTTACAGATATTCCAGTTTTGATTtctacagaaaaaagaaaataactgcAAAAAGGTTCAAAATTTCATGAAGTTGagaataatgacagaatttctgtTTTTGGTTGACCtacagaaaaatatgaatttgcaGCACTCTTGTTGAGGTGAATAATGTGCTGGGAAGCCTATTTTGCATACTTATTCTTAAAACCGTCTTTTACACCCATACTGTGTAAGCATTTGTGTAAACCCTGTGGTAAGAAAATGGCAGACACTCATTTTTGCACATGCTGCAATCCATGATTAACCCTGACAACCTTAACACATACCCTGGCCACGTTTCAGTATGGTGGGATTAAAGTACTGTCATGTGATGCATAATATGACTGCCATTAACCACAGTGTTTACTCCACAAGCCGTTCCACTGGCCTAGACTAGAGAGATTCAAGCCTTTGACTAGAATAAATCTGATTGATTTTTGAGACAACCGTGATGCCTTGAATTCAAATTAtttgcttcttttcttcttttgccCATATAACTGTGTGGGTGTTCATAAAAGGTGTGTGACCTATATTTGTGCTAAACGAAACATAAAATGATTGTATTGTATCTCTGTTTTTGAAAGTAGATATGGCATAAAATTTCAGTGTGCCTACAGTGCATCTCAATAAAACCAACAGTGAAAATA

Function

symbol description
hibch Predicted to enable 3-hydroxyisobutyryl-CoA hydrolase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Orthologous to human HIBCH (3-hydroxyisobutyryl-CoA hydrolase).

NR:

description
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial-like

GO:

id name namespace
GO:0006574 valine catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity molecular_function

KEGG:

id description
K05605 HIBCH; 3-hydroxyisobutyryl-CoA hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248252.1 True 2324 mRNA 0.41 14 19643049 19666613

Neighbor

gene id symbol gene type direction distance location
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 758724 18793081 ~ 18884325 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding upstream 851683 18773760 ~ 18791366 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding upstream 871310 18760460 ~ 18771739 (+)
slc12a8 slc12a8,LOC107741923,LOC107660618,LOC107673744,LOC107714115,LOC107555904 coding upstream 882783 18742810 ~ 18760266 (+)
znf148 znf148,LOC107673743,LOC107660621 coding upstream 902993 18734419 ~ 18740056 (+)
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding downstream 6647 19673260 ~ 19676836 (+)
osgepl1 osgepl1,LOC107660598 coding downstream 50649 19717262 ~ 19720435 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding downstream 65742 19732355 ~ 19733971 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 75027 19741640 ~ 19748311 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 100050 19766663 ~ 19778896 (+)
G71586 NA non-coding upstream 8202 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 22573 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 35848 19606985 ~ 19607201 (+)
G71517 NA non-coding upstream 386816 19256030 ~ 19256233 (+)
G71509 NA non-coding upstream 391892 19250839 ~ 19251157 (+)
G71627 NA non-coding downstream 84969 19751582 ~ 19752090 (+)
G71628 NA non-coding downstream 85695 19752308 ~ 19752693 (+)
G71630 NA non-coding downstream 86617 19753230 ~ 19753756 (+)
G71629 NA non-coding downstream 87911 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 89253 19755866 ~ 19756178 (+)
G71585 NA other upstream 21556 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 99372 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 711587 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 953507 18682672 ~ 18689542 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 1000563 18635106 ~ 18642486 (+)
ormdl1 ormdl1,LOC107602148 other downstream 42751 19709364 ~ 19714404 (+)
si:dkey-10c21.1 NA other downstream 546782 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 682214 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 758388 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 770545 20437158 ~ 20764175 (+)

Expression


Co-expression Network