hoxd12a (hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821)


Basic Information

Item Value
gene id hoxd12a
gene name hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4385439 ~ 4387003 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248255.1
AGAAGCGTTCGGGCAAGCTCGTCAGAAATGTGCGAGCACAATCTTCTCAGTTCTGGGTATGTCGCTCCCCTTCTGAATTTCCACTCGTCCGACTCCCTCTACCTCCAAAATCTGCGAGGCAATGGAGTCCATCTCTCTGGGCTCCCGCAGATGTCCTACAGTAGGAGAGAGGTGTGCTCGCTCCCGTGGACTTCTCCAAATTCGTGCACAGCTCCGGCCCAGAGCCGCGCCTACGGCGGCTACTCTCAGCCGCTTTTCGGCAGTTCAGCCGCTGCGAGCGCTAGCCTCAACACTCACAGAAAGGAGGAATCCGGGAGGTACTGCTTCCAAGATGTCAGCCACAAATCAGAGGAGCCCGGACGACTTAACGCGGCTTACGCAAGCGATCAGAGCGAACTTTCAAACTCGGAGAGGCGACAGCAGAGCAGGGTCGGGCCGAGTGAACTTAGCTTTATCGAGCAGCCGGTGACTGATGCTTCGAAGCAGTCTGTCAGCTCCATCGCTGCGTTTCAACCATCACTGAACAGCCCGGGCGTTAGATCAGCCTTCTCCGACGgACTGCCGTGGTGTCCCTCACAGGTGAGGTCAAGAAAAAAGAGGAAACCCTACACGAAGCCCCAGCTGGCCGAACTGGAGAACGAATTTATGATGAATGAATTTATAAACCGGCAGAAACGAAAGGAGCTTTCGGACAGACTGGAACTGAGCGATCAGCAAGTGAAAATCTGGTTTCAGAACCGcaggatgaagaaaaaaagacttatGATGCGCGAGCATACCTTCACTGtttactagtttttttttttattttattttataaacagtGACTTGGAGATGCAAATCCACCAAACCCCTCTATCTGGAACTCCTCCGAACGCCTCTGTCATTTAATAATCAACTCCAACAGgctgttaaataattaaagccGAACCGTTTAAAACGTGTATTTATTAGCCACGAAGTCGCTGCGTCTGTATGCGtctgctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgggtaaAGAACGCTGATTCCAAAGCTGTAACGTTAGCTCGCTGTGTGTGAAAATAACGCTTTGTAGTTTAAAAGTGCACCGAAGGTAGAGTAGGAACGCTGTGTCTATATATCGGCTTCATAACACACATTCCGGCCTCATTTAAAAGCGCGCGGATAACTGCATGGAGTCAATAAACTGTCAgacctttattcatttttttgtatcttcCGATCTAAAACTacgttttgctgtattttaaccAAAACGTGTCacgtgtaatattt

Function

symbol description
hoxd12a Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including mesenchyme; pectoral fin; pectoral fin bud; pectoral fin field; and tail bud. Human ortholog(s) of this gene implicated in clubfoot. Orthologous to human HOXD12 (homeobox D12).

NR:

description
homeobox protein Hox-D12a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09297 HOX_12; homeobox protein HoxC/D12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248255.1 True 1315 mRNA 0.48 2 4385439 4387003

Neighbor

gene id symbol gene type direction distance location
hoxd13a NA coding upstream 2554 4381524 ~ 4382885 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding upstream 273214 4109650 ~ 4112225 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 404228 3948018 ~ 3981211 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 439831 3925891 ~ 3945608 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 474619 3906741 ~ 3910820 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 2645 4389648 ~ 4392011 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 7713 4394716 ~ 4397578 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 11720 4398723 ~ 4401072 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding downstream 30285 4417288 ~ 4423340 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding downstream 160498 4547501 ~ 4555749 (+)
G67684 NA non-coding upstream 28626 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 176898 4207690 ~ 4208541 (+)
G67641 NA non-coding upstream 220367 4162356 ~ 4165072 (+)
G67637 NA non-coding upstream 227476 4156656 ~ 4157963 (+)
G67606 NA non-coding upstream 320478 4064637 ~ 4064961 (+)
LOC122351246 NA non-coding downstream 185571 4572574 ~ 4575525 (+)
G67752 LOC107600734,LOC107683095 non-coding downstream 290447 4677450 ~ 4685181 (+)
G67769 NA non-coding downstream 391354 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 436423 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 483182 4870185 ~ 4870882 (+)
G67630 NA other upstream 163268 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 258426 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 399477 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 401857 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 462561 3913638 ~ 3922878 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 22892 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 136283 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 322050 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 628467 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 638560 5025563 ~ 5028639 (+)

Expression


Co-expression Network