hoxd13a


Basic Information

Item Value
gene id hoxd13a
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4381524 ~ 4382885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248257.1
TAAAGGCTAACTAGCGACGGAGATTGTTCTCTCTGCAGCTTTCTTGGTTTTGAGCTCATAAAACACGATGTGTTAAGTTACCCCGCGTGTACAAGTAAACATGGAAGCGAGGGGGTTAGAGGAAGCGTTCAGAAGCGTTTACCCGCCGGCCTTCGGCTCGCGCTCAGCTCGGTCGGAGACTCCGGTGTTCTCCGCTTGGACGAGCGCGGAGCCTCTCCCTCCTCGCACCGGCTCCAGCTCCGCTTCTGGATGTAGTTTCGGGGACGGCTGTTGCGGTTGCAAACTTCCACAGAACGCCGCGTTCCAGTCCGGCGCGGCGAAGCGAATTGCGAACGGGCGGTCTGCCGGTAAACCCGTGGATTACGGCGATGGCTGGTTCAAGGAGTTGGCTTTTTACCGAAGTCCCACGGGTTCCTACCCGAGAATCCGCCCTGCTTATATCGATTTACCTGCGCTTCACAGAACGATGCCTGGAGCACCCAGACAGGAGACTCTGACAATGGAAGGCCACCAGCCGTGGAGCTGGCCGAACAATCGACAACTTTATTGCTCCAAAGACCAGACGCGTATCTGGAAACCATCATTAACAGAGGGAAAGGCGGCTTCGTTCTGTCAGCGCGGGAGAAAGAAGCGGGTTCCTTACACAAAACTGCAACTGAAAGAGCTCGAGCGGGAATACAACGACACCAAGTTCATCACGAAGGAGAAGAGACGTCGGATCGCTTTTTCTACAAACCTGTCTGAGAGACAAGTAACTATATGGTTCCAAAACCGTCGGGTCAAGGATAAGAAGGGACCCGAAGGATATTAATCCTATTAAAGATCCGTTCACGCAAACGCTGGCTTACATACTGAAGatgtttgttcatttctttaaaaaaaggtgttttattatttgcatctcgtcttaataatttaaatattcttaaatgtcATTCGTTAGCTACACTGATCTTTCCTTTCGGCCGAAATGTATAGTTTCACGGAAGAGTCTGTAACGCTGGCGAAGAAAAAGcggctaaaatgttttaagcacCAAATAAAGCGTTAATGGCGTCTTTAAATAAT

Function

NR:

description
homeobox protein Hox-D13-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248257.1 True 1068 mRNA 0.49 2 4381524 4382885

Neighbor

gene id symbol gene type direction distance location
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding upstream 269299 4109650 ~ 4112225 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 400313 3948018 ~ 3981211 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 435916 3925891 ~ 3945608 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 470704 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 613987 3760833 ~ 3767537 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 2554 4385439 ~ 4387003 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 6763 4389648 ~ 4392011 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 11831 4394716 ~ 4397578 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 15838 4398723 ~ 4401072 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding downstream 34403 4417288 ~ 4423340 (+)
G67684 NA non-coding upstream 24711 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 172983 4207690 ~ 4208541 (+)
G67641 NA non-coding upstream 216452 4162356 ~ 4165072 (+)
G67637 NA non-coding upstream 223561 4156656 ~ 4157963 (+)
G67606 NA non-coding upstream 316563 4064637 ~ 4064961 (+)
LOC122351246 NA non-coding downstream 189689 4572574 ~ 4575525 (+)
G67752 LOC107600734,LOC107683095 non-coding downstream 294565 4677450 ~ 4685181 (+)
G67769 NA non-coding downstream 395472 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 440541 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 487300 4870185 ~ 4870882 (+)
G67630 NA other upstream 159353 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 254511 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 395562 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 397942 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 458646 3913638 ~ 3922878 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 27010 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 140401 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 326168 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 632585 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 642678 5025563 ~ 5028639 (+)

Expression


Co-expression Network