hoxd11a (hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752)


Basic Information

Item Value
gene id hoxd11a
gene name hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4389648 ~ 4392011 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248258.1
CTGATATTGATATATGGTAATTTTTTTACCGGATCACATGACACAATTACCTCAAGAATCGATCAAGATGAATTGCACGTCAGCGTGCGTTTCCGATTTTTTCTTCCTCGCGAGTCCTATCCGCGCGCATATGGTGCAATAGATGGGCAAAGTTTAACAGTCAAGCAGACGTTTTTTTCCTCTCTAAGGCTAAAAGCGAGCGATGACGGACTACGATGATCGCGGCAACTGTGCATCTAATATGTATTTACCGTACTACGTCTCAGCTCCCGATTTTTCGTCGGTCTCGTCGTTTTTACCGCAAACTACATCGTGTCAAGTCAATTTCCCCTATTCTTCCAACCTAGCGCAAGTCCAACCTGTTCGTGAAGTGACTTTCAGGGACTACGGACTGGATCATCCGAGCAAATGGCATTACAGGGGCAATTACGCTTCGTACTATTCAACGGAGGAGATAATGCACCGAGATCTCCTGCAGTCGACGAACCGAGCggaaatgatttttaaaaacgatTCCGTTTACAGCCACCACGGCGGCACCAACTCCTCGTGCGGTTTCTTCACCAACGTCGGCCGGAACGGGGTGCTTCCGCAAGGGTTCGATCAGTTCTTTGAGACCGTCAGCTCCGAGAAGCCCGTCCCCGAGCAGCCCAAACAAAAGCCAGACGCGGGTGTCCCCGGAGATGCTGCGTGCGATGTGTCCACGGATAGCGCGGAGCAGACCAAACGAGACCCTACGGAGACCGCAGAGGAGGAATCCTCGGTATCAACCTGCGACGAAGAAAAGAACCACGACTCGAGTGCAGCAAAGTCCAGAAAAAAGAGATGCCCCTACTCGAAATACCAGATCCGAGAACTTGAACGAGAATTCTTTTTCAACGTGTACATAAACAAAGAGAAGCGTCTGCATTTGTCGAGAATGCTCAGTCTCACAGACCGACAAGTGAAGATCTGGTTCCAGAACCGGaggatgaaagagaaaaagctgAATCGAGATCGGCTCCAGTATTTCACCGGAAACCCGTTGTTCTGAGAGCCACGGTATTGGCCGAGACGATGAAACCATGGCTATTCGGTCGTGTCGTGATTGCGGGACATCATCCATTCGTCGGACACCTGGGTTATTTTCACGTCGACTCTATGCAAAACACTTGCtatcaaaaatgtatgtgaTCCTCGAAATTCTGCACAAATGATCTACGACAGCGTAATCGCGATGATGGAAATTCCGAGCTCTCAGGAGCATATAGGTACCTCGACAATCTCTCCATACCCTTGCGTTGACGCCCCTGAGACGCGGTagctttgtatttgtatttatttattgtgttttgcacCGTTCCGTTGAAATCAGTTCGAGCGGGCGATGCGTTCGGTTACAACAAATCAGTACGTACTTACGTTGAGGTAGAGCTGTGTATGCATTTATTCGTTTGAAGCATGTAATGTATCTATGTATTAAACCAATAAAAATTACGCCAGATTTCTATCTGCTGCTGTGACGC

Function

symbol description
hoxd11a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including mesenchyme; neural plate; pectoral fin bud; pectoral fin field; and tail bud. Orthologous to human HOXD11 (homeobox D11).

NR:

description
homeobox protein Hox-D11a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248258.1 True 1505 mRNA 0.48 2 4389648 4392011

Neighbor

gene id symbol gene type direction distance location
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding upstream 2645 4385439 ~ 4387003 (+)
hoxd13a NA coding upstream 6763 4381524 ~ 4382885 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding upstream 277423 4109650 ~ 4112225 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 408437 3948018 ~ 3981211 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 444040 3925891 ~ 3945608 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 2705 4394716 ~ 4397578 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 6712 4398723 ~ 4401072 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding downstream 25277 4417288 ~ 4423340 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding downstream 155490 4547501 ~ 4555749 (+)
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding downstream 184171 4576182 ~ 4610978 (+)
G67684 NA non-coding upstream 32835 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 181107 4207690 ~ 4208541 (+)
G67641 NA non-coding upstream 224576 4162356 ~ 4165072 (+)
G67637 NA non-coding upstream 231685 4156656 ~ 4157963 (+)
G67606 NA non-coding upstream 324687 4064637 ~ 4064961 (+)
LOC122351246 NA non-coding downstream 180563 4572574 ~ 4575525 (+)
G67752 LOC107600734,LOC107683095 non-coding downstream 285439 4677450 ~ 4685181 (+)
G67769 NA non-coding downstream 386346 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 431415 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 478174 4870185 ~ 4870882 (+)
G67630 NA other upstream 167477 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 262635 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 403686 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 406066 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 466770 3913638 ~ 3922878 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 17884 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 131275 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 317042 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 623459 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 633552 5025563 ~ 5028639 (+)

Expression


Co-expression Network