tmtc4 (tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590)


Basic Information

Item Value
gene id tmtc4
gene name tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15389218 ~ 15399437 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248276.1
CACGGTCTATTCTTCTCCACGCGCTAGCAGGAAGTAGAGGCAAGAGGCTCATACAGGGATCAGCCACCATTTAGCCACGTATTAAGcctttattattacagtttgcCTGGTTTAGCGATATCTGCAACGTATTTATTTGACACCGGTGATTTAAAGCTTGTATTGCTCGTCTTCAACAGATTGTAAATCGTCCTCGTCGGCGGGCAGACAGTTTTGACGTCGGTGCACGtttacactattattatttgtgaatcATGTTTTGACGATCGTCATTCTCGCGCGAGCAAAATATAGGAGTAGACGACGTTGAAAGTCTGAATGGTTTCGTATCATTTGCTCGCTTTAACAGTCGGTTGCTATGCATTGCATGCATCTGTGTGTACAGCCATGCAGCGAAGCATGCAACTGTGCTGAGATGTCACATCGCCTTTTCTAACAGATCTCTGTAGTGCATACAGTAGTGGTGGGGCAGAATGAGCAGAGACCACATGAAAGATGGTGCTTTCTGAGCCTTACTGGGATCATCACATCCCCCTGCCAAAATTGGGACCCTTGCACTCTCGGCTGGTCACTGCCTTTGTTGCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCAGAAGCCATCATCAATAACAAGGATTTAAATCCTGACAGTCCACTGAGTAACATTTGGAAAAATGACTTTTGGGGAAGTAACTTAAGTAGCAACTCCAGTCACAAATCCTACCGGCCGCTGACTGTCCTGACCTTCAGGATCAACTACCTCTTGGCTGGTGGACTGCATCCGATTGGCTTCCACGTCCTCAACGTTGCCCTCCACTGTGTTATTTCTGTGTTAATGATCGATGTGTTTGCAATATTAATTGGCGGCCTGGTTCAAGACGGAAGAGGGGTGAAACTCAATCTTCCTCCGAAAGCTTCCTTCCTGGCTGCGCTCTTCTTTGCTGCACATCCAGTTCACACGGAAAGTGTGGCTGGCGTTGTTGGCAGAGCAGATTTGTTGTGTGCCCTCTTTTTTCAGCTCTCTTTTCTGGTTTACTGCAAAGCGTTTCAAGGTGGTGATAAAAAGTTCTCAGTGTTGTGGATATTTGGCAGCATTCTTCTTTGTGCTGTAGCAATGCTGTGCAAGGAGCAAGGCATTACAGTTTTGGGAGTGAATGCTGCTTATGATATTCTCATggtttgtaatgtaaatatcTATGAGCTCGCTCACCAGCTGCTGTTCAGGAGAAAATCAGTTGACATTGGTGGGTTGGTGAGGAGCGGTTTGCTTATGAGGTTGGCTCTTCTCTTTCTTGGTGGATCCTTTCTTTTGTATGCGAGGTGGCGAATCATGGGAACTGGGCCTCCATCTTTCACTGAGGTGGACAACCCAGCATCCTTTGCTGAAAATGTCATCTTGAGGaTTGTGAACTATAATTACTACTACTCCTTGAATGCCTGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTGCCTCTGATTAAATCAGCCActgattggaggatggtctggCCACTTTTGCTGTGGTGCTGTCTAATAGGCTTGGTGTACCAAGCTCTGTGCTCACAGGACAGCAATAAAAGAAGGACTCTGACATTTGGCCTTGTACTACTGGTGATTCCATTCCTGCCAGCCAGTAATCTGTTCTTCAGGGTGGGTTTTGTGATAGCCGAGCGGGTGCTGTACCTCTCCTCAGCGGGCTACTGCCTCATCCTGGCCTACACTGTGGGCTACTGTAGCTGCCACTGGAAGAAACACAAGAGGCTGCTGAGAGCGGCCACGTTGACGCTGCTGTGTGTGAACGTGGCTCGCTCTGCACAGCGCAGTCAACAGTGGAGGTCTGAACAGAGTCTCTTCACCAGCGCCCTGTCTGTCTGCCCGCTCAATGCCAAGGTGCATTATAACGTTGGCAAAAACCTTGCTGACAGAGGCAACCAGAGTGCCGCAGTCAAGTACTACAGAGAAGCAGTgagATTACACCCTAAGTATGTTCATGCCATGAACAATCTTGggaatatattaaaagaaagaaacgaGTTAAAGGAAGCAGAAGAACTCCTGTCTGCTGCGGTTCATATCCAGCCTGATTTTGCTGCAGCTTGGATGAATCTGGGTATTGTGCAGAACAGTCTGAAAAAGTTTTACGAGGCTGAACAGAGCTATCGGAATGCCATTcgattcagaaaaaaatacccAGACTGTTATTACAACTTGGGACGTCTGTATGCAGACCTGAACCGCAGTATTGACGCGCTGAATGCCTGGAGGAACGCCACCATGCTGAAGCCTGACCACAGCCTGGCGTGGAACAACATGGTTATATTGCTGGACAACACTGGAAATCTGGCTCAGGCTGAGCTGATTGGAAAGGAAGCATTAAAGATATTGCCAAAAGATCACACCATCATGTTCTCCCTCGCCAATGTCCTTGGGAAACAGGAAAAGTACAAGGAGTCGGAAGGATTCTTTCTTAACGCTCTAAAGATCAACCCAAACGTTGCCAGTTGCCATGGTAATCTTGCTGTCCTTTATCACCGTTGGGGAAAACTAGACTTAGCAAAGCGACACTATGAACTGTCTCTTCGACTGGATCCCAGCGCTCCAGGAACCAAGGAAAACTACAACATGCTAAAACGCAAACTAGAACAGCGGCAAAAGACTGTTGGATAACACTGTTTTTGATAAATGCATGCCACACAAGTCTTTGTACGGTCTCtacataagtaaataaattaattcatcttA
>XM_043248277.1
CACGGTCTATTCTTCTCCACGCGCTAGCAGGAAGTAGAGGCAAGAGGCTCATACAGGGATCAGCCACCATTTAGCCACGTATTAAGcctttattattacagtttgcCTGGTTTAGCGATATCTGCAACGTATTTATTTGACACCGGTGATTTAAAGCTTGTATTGCTCGTCTTCAACAGATTGTAAATCGTCCTCGTCGGCGGGCAGACAGTTTTGACGTCGGTGCACGtttacactattattatttgtgaatcATGTTTTGACGATCGTCATTCTCGCGCGAGCAAAATATAGGAGTAGACGACGTTGAAAGTCTGAATGGTTTCGTATCATTTGCTCGCTTTAACAGTCGGTTGCTATGCATTGCATGCATCTGTGTGTACAGCCATGCAGCGAAGCATGCAACTGTGCTGAGATGTCACATCGCCTTTTCTAACAGATCTCTGTAGTGCATACAGTAGTGGTGGGGCAGAATGAGCAGAGACCACATGAAAGATGGTGCTTTCTGAGCCTTACTGGGATCATCACATCCCCCTGCCAAAATTGGGACCCTTGCACTCTCGGCTGGTCACTGCCTTTGTTGCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCAGAAGCCATCATCAATAACAAGGATTTAAATCCTGACAGTCCACTGAGTAACATTTGGAAAAATGACTTTTGGGGAAGTAACTTAAGTAGCAACTCCAGTCACAAATCCTACCGGCCGCTGACTGTCCTGACCTTCAGGATCAACTACCTCTTGGCTGGTGGACTGCATCCGATTGGCTTCCACGTCCTCAACGTTGCCCTCCACTGTGTTATTTCTGTGTTAATGATCGATGTGTTTGCAATATTAATTGGCGGCCTGGTTCAAGACGGAAGAGGGGTGAAACTCAATCTTCCTCCGAAAGCTTCCTTCCTGGCTGCGCTCTTCTTTGCTGCACATCCAGTTCACACGGAAAGTGTGGCTGGCGTTGTTGGCAGAGCAGATTTGTTGTGTGCCCTCTTTTTTCAGCTCTCTTTTCTGGTTTACTGCAAAGCGTTTCAAGGTGGTGATAAAAAGTTCTCAGTGTTGTGGATATTTGGCAGCATTCTTCTTTGTGCTGTAGCAATGCTGTGCAAGGAGCAAGGCATTACAGTTTTGGGAGTGAATGCTGCTTATGATATTCTCATggtttgtaatgtaaatatcTATGAGCTCGCTCACCAGCTGCTGTTCAGGAGAAAATCAGTTGACATTGGTGGGTTGGTGAGGAGCGGTTTGCTTATGAGGTTGGCTCTTCTCTTTCTTGGTGGATCCTTTCTTTTGTATGCGAGGTGGCGAATCATGGGAACTGGGCCTCCATCTTTCACTGAGGTGGACAACCCAGCATCCTTTGCTGAAAATGTCATCTTGAGGaTTGTGAACTATAATTACTACTACTCCTTGAATGCCTGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTGCCTCTGATTAAATCAGCCActgattggaggatggtctggCCACTTTTGCTGTGGTGCTGTCTAATAGGCTTGGTGTACCAAGCTCTGTGCTCACAGGACAGCAATAAAAGAAGGACTCTGACATTTGGCCTTGTACTACTGGTGATTCCATTCCTGCCAGCCAGTAATCTGTTCTTCAGGGTGGGTTTTGTGATAGCCGAGCGGGTGCTGTACCTCTCCTCAGCGGGCTACTGCCTCATCCTGGCCTACACTGTGGGCTACTGTAGCTGCCACTGGAAGAAACACAAGGTGCATTATAACGTTGGCAAAAACCTTGCTGACAGAGGCAACCAGAGTGCCGCAGTCAAGTACTACAGAGAAGCAGTgagATTACACCCTAAGTATGTTCATGCCATGAACAATCTTGggaatatattaaaagaaagaaacgaGTTAAAGGAAGCAGAAGAACTCCTGTCTGCTGCGGTTCATATCCAGCCTGATTTTGCTGCAGCTTGGATGAATCTGGGTATTGTGCAGAACAGTCTGAAAAAGTTTTACGAGGCTGAACAGAGCTATCGGAATGCCATTcgattcagaaaaaaatacccAGACTGTTATTACAACTTGGGACGTCTGTATGCAGACCTGAACCGCAGTATTGACGCGCTGAATGCCTGGAGGAACGCCACCATGCTGAAGCCTGACCACAGCCTGGCGTGGAACAACATGGTTATATTGCTGGACAACACTGGAAATCTGGCTCAGGCTGAGCTGATTGGAAAGGAAGCATTAAAGATATTGCCAAAAGATCACACCATCATGTTCTCCCTCGCCAATGTCCTTGGGAAACAGGAAAAGTACAAGGAGTCGGAAGGATTCTTTCTTAACGCTCTAAAGATCAACCCAAACGTTGCCAGTTGCCATGGTAATCTTGCTGTCCTTTATCACCGTTGGGGAAAACTAGACTTAGCAAAGCGACACTATGAACTGTCTCTTCGACTGGATCCCAGCGCTCCAGGAACCAAGGAAAACTACAACATGCTAAAACGCAAACTAGAACAGCGGCAAAAGACTGTTGGATAACACTGTTTTTGATAAATGCATGCCACACAAGTCTTTGTACGGTCTCtacataagtaaataaattaattcatcttA
>XR_006251733.1
CACGGTCTATTCTTCTCCACGCGCTAGCAGGAAGTAGAGGCAAGAGGCTCATACAGGGATCAGCCACCATTTAGCCACGTATTAAGcctttattattacagtttgcCTGGTTTAGCGATATCTGCAACGTATTTATTTGACACCGGTGATTTAAAGCTTGTATTGCTCGTCTTCAACAGATTGTAAATCGTCCTCGTCGGCGGGCAGACAGTTTTGACGTCGGTGCACGtttacactattattatttgtgaatcATGTTTTGACGATCGTCATTCTCGCGCGAGCAAAATATAGGAGTAGACGACGTTGAAAGTCTGAATGGTTTCGTATCATTTGCTCGCTTTAACAGTCGGTTGCTATGCATTGCATGCATCTGTGTGTACAGCCATGCAGCGAAGCATGCAACTGTGCTGAGATGTCACATCGCCTTTTCTAACAGATCTCTGTAGTGCATACAGTAGTGGTGGGGCAGAATGAGCAGAGACCACATGAAAGATGGTGCTTTCTGAGCCTTACTGGGATCATCACATCCCCCTGCCAAAATTGGGACCCTTGCACTCTCGGCTGGTCACTGCCTTTGTTGCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCAGAAGCCATCATCAATAACAAGGATTTAAATCCTGACAGTCCACTGAGTAACATTTGGAAAAATGACTTTTGGGGAAGTAACTTAAGTAGCAACTCCAGTCACAAATCCTACCGGCCGCTGACTGTCCTGACCTTCAGGATCAACTACCTCTTGGCTGGTGGACTGCATCCGATTGGCTTCCACGTCCTCAACGTTGCCCTCCACTGTGTTATTTCTGTGTTAATGATCGATGTGTTTGCAATATTAATTGGCGGCCTGGTTCAAGACGGAAGAGGGGTGAAACTCAATCTTCCTCCGAAAGCTTCCTTCCTGGCTGCGCTCTTCTTTGCTGCACATCCAGTTCACACGGAAAGTGTGGCTGGCGTTGTTGGCAGAGCAGATTTGTTGTGTGCCCTCTTTTTTCAGCTCTCTTTTCTGGTTTACTGCAAAGCGTTTCAAGGTGGTGATAAAAAGTTCTCAGTGTTGTGGATATTTGGCAGCATTCTTCTTTGTGCTGTAGCAATGCTGTGCAAGGAGCAAGGCATTACAGTTTTGGGAGTGAATGCTGCTTATGATATTCTCATggtttgtaatgtaaatatcTATGAGCTCGCTCACCAGCTGCTGTTCAGGAGAAAATCAGTTGACATTGGTGGGTTGGTGAGGAGCGGTTTGCTTATGAGGTTGGCTCTTCTCTTTCTTGGTGGATCCTTTCTTTTGTATGCGAGGTGGCGAATCATGGGAACTGGGCCTCCATCTTTCACTGAGGTGGACAACCCAGCATCCTTTGCTGAAAATGTCATCTTGAGGaTTGTGAACTATAATTACTACTACTCCTTGAATGCCTGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTGCCTCTGATTAAATCAGCCActgattggaggatggtctggCCACTTTTGCTGTGGTGCTGTCTAATAGGCTTGGTGTACCAAGCTCTGTGCTCACAGGACAGCAATAAAAGAAGGACTCTGACATTTGGCCTTGTACTACTGGTGATTCCATTCCTGCCAGCCAGTAATCTGTTCTTCAGGGTGGGTTTTGTGATAGCCGAGCGGGTGCTGTACCTCTCCTCAGCGGGCTACTGCCTCATCCTGGCCTACACTGTGGGCTACTGTAGCTGCCACTGGAAGAAACACAAGAGGCTGCTGAGAGCGGCCACGTTGACGCTGCTGTGTGTGAACGTGGCTCGCTCTGCACAGCGCAGTCAACAGTGGAGGTCTGAACAGAGTCTCTTCACCAGCGCCCTGTCTGTCTGCCCGCTCAATGCCAAGGTGCATTATAACGTTGGCAAAAACCTTGCTGACAGAGGCAACCAGAGTGCCGCAGTCAAGTACTACAGAGAAGCAGTgagATTACACCCTAAGTATGTTCATGCCATGAACAATCTTGggaatatattaaaagaaagaaacgaGTTAAAGGAAGCAGAAGAACTCCTGTCTGCTGCGGTTCATATCCAGCCTGATTTTGCTGCAGCTTGGATGAATCTGGGTATTGTGCAGAACAGTCTGAAAAAGTTTTACGAGGCTGAACAGAGCTATCGGAATGCCATTcgattcagaaaaaaatacccAGACTGTTATTACAACTTGGGACGTCTGGATGGTTTTGGTCTTGGGCTATTATGTTCATCCTTCCTGTTATGCAGACCTGAACCGCAGTATTGACGCGCTGAATGCCTGGAGGAACGCCACCATGCTGAAGCCTGACCACAGCCTGGCGTGGAACAACATGGTTATATTGCTGGACAACACTGGAAATCTGGCTCAGGCTGAGCTGATTGGAAAGGAAGCATTAAAGATATTGCCAAAAGATCACACCATCATGTTCTCCCTCGCCAATGTCCTTGGGAAACAGGAAAAGTACAAG

Function

symbol description
tmtc4 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural plate; and retinal ganglion cell layer. Orthologous to human TMTC4 (transmembrane O-mannosyltransferase targeting cadherins 4).

NR:

description
transmembrane and TPR repeat-containing protein 4

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248276.1 True 2787 mRNA 0.47 18 15389218 15399437
XM_043248277.1 False 2655 mRNA 0.46 17 15389218 15399437
XR_006251733.1 False 2533 transcript 0.47 17 15389849 15399437

Neighbor

gene id symbol gene type direction distance location
zic5 zic5,LOC107569541,LOC107694589,LOC107740913,LOC107748614,LOC107681322,LOC107600378 coding downstream 121699 15263879 ~ 15267519 (-)
si:ch211-184m13.4 LOC107668872,LOC107748619,LOC107569521,LOC107740921,LOC107600422,LOC107681312 coding downstream 207541 15179474 ~ 15181677 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding downstream 218548 15164299 ~ 15170670 (-)
gpr18 LOC107740919,LOC107681324,LOC107668869,LOC107748622,LOC107600424,LOC107570094 coding downstream 227940 15157104 ~ 15161278 (-)
klf5b klf5,LOC107740910,LOC107668908,LOC107720143 coding downstream 382548 15001464 ~ 15006670 (-)
nalcn nalcn coding upstream 26010 15425447 ~ 15490245 (-)
fgf14 fgf14,LOC107569606,LOC107600372,LOC107681314,LOC107690615 coding upstream 125921 15525358 ~ 15626791 (-)
ankrd44 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding upstream 258077 15657514 ~ 15680839 (-)
sf3b1 sf3b1,LOC107731751,LOC107569635,LOC107659892,LOC107719800,LOC107595847,LOC107690614 coding upstream 283263 15682700 ~ 15692615 (-)
hspd1 hspd1,LOC107569661,LOC107690611,LOC107659893,LOC107595848 coding upstream 302478 15701915 ~ 15707664 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding downstream 113377 15013357 ~ 15275841 (-)
LOC122351294 NA non-coding downstream 126542 15256988 ~ 15262676 (-)
LOC122351681 dach1,LOC107668899 non-coding downstream 347488 15034819 ~ 15041730 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding downstream 407365 14975412 ~ 14981853 (-)
LOC122352110 NA non-coding downstream 446355 14937124 ~ 14942863 (-)
G70581 NA non-coding upstream 19562 15418999 ~ 15421577 (-)
LOC122351574 NA non-coding upstream 229446 15628883 ~ 15638436 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding upstream 242822 15642259 ~ 15644276 (-)
G70660 NA non-coding upstream 362946 15762383 ~ 15762669 (-)
LOC122352066 NA non-coding upstream 548676 15948113 ~ 15953976 (-)
G70549 NA other downstream 83243 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1016544 14359646 ~ 14372674 (-)
G70317 NA other downstream 1135442 14196479 ~ 14253776 (-)
G70294 NA other downstream 1449350 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 1476275 13879570 ~ 13912943 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 371984 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1321367 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1417703 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 1487316 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1836435 17235872 ~ 17255491 (-)

Expression


Co-expression Network