ccdc173 (ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830)


Basic Information

Item Value
gene id ccdc173
gene name ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24728368 ~ 24733782 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248298.1
CTAGCTTGCTGTCTCTTTAAGGCGTCGCATGACGTCGCCTACATAACTTGCAGGGTTGCTGGGAAACAGTGTAACAAAAGTTAAAACGGTTGCCCAGCAACACAGCACAGAGTGTCCGAACGTGTTACCAACGCTAGCTAAGTTTTCCGGTGTATGGAggaataaacataaataaacatctcaaCGCGTGTCAAGATCAACGAATGTGAgaagatataaaaaaagcagttaTAATGTCAACAGCTTCGATAACGACAGGTGTCGTTCAGTACGGGCGGAGGAAAGGCTCGAGTCAGCAAGTTGAGAGGTCGGAGGTGGAGAAAACAGAGGCGGATCTTCGTCAAATGGTAGTTTTGTCCAAATCGGAATGGCAGCGCCTTCAGGACAGTGTGAACGGAGTCAATCAACACAACAGGAGCGGGATTGAAGCGGCCCGGCAGCGGGAGGCGCTGCGCATGCGCTCTAAAGAGCTCGTAAAACACTGGTCCAACACCATAGCTgGACAACGACAAAAAAAGCTAGAGGCCAAAAAATTTCGAGAAGCGATTGAAGAAGAGGAGCGGAAACAAATCGACATAGAAGAAGCAAAATACCAGGCCAAGATACGAAAGGAGGCCATTGAGCAAGCAAAAACCCAGCAGTACTACCAGACCGACAGAGTCAAAGGCTTCCACagtGCTCTGCTGCTGGCTGAGGTTTTGAAGGAAAGGGAGGCTCAGATCGAGCTGAAGCGCATGAAGCAAAATGCCAGCAAGGACATAGACAGAGATATCTTGGCTCAAATGGCTTGCAGAGAAGAACAGTCCCTCCAGCGGGAACAGCGGAAAGCCCTGCAGAGGAAACAAGACCAGCTGGCCACCGCTGAGAGCGTGAAACAACAGATAAAGGATCGTGAAATGATAAAAGAGCAGGAGAGGCAGGAGGTCAAACGTGCCGCTGAAGAAATCGAGCGCCTCCGAGATCTTCATCTGTGGGAACAGTCCATGAACGAGCgcaagaaagaggaagagaagagaagcgCGATGAAGGCTCATCAGGACTACTTGACCAACAGGGAGCTGGTGAAAGCCACAGAGGCTCAGAggcaggaggaagaggaggagaaacgGAAGCAGCTCGCCAAACATAAAGATAAAGTCATGAAAATGAGGAAGGAGAAGCAAGAGGAAATATTTAGAGAGctccagagacacagagagactaTTATACAGAAGTTAGCAGTGCAGAAGCAGCAACAAATCAGCAACGAGGAAGAGATCGTCGCGAAAGCGGTGGCCGAGCGTGAGGCCAGACAGGCTCGAGAACAGCGcgagaaagaggaaaaacacgCGGCCATGTTAAACTCCATCGCTGCGCACAGAGAGTCCATGAGGAAAGAGCAAGAACGAAACGCAGAAGAGGAGAAACAGAAAGCTCTGGAGATGCTGAATGCGAAGAAGGAAGCAAATAAAATCTTCATGAGAAAGCAAGAACTTCAAGCTCAGAAAGCTAGAGAAGAAGGCAAAACACTACAAGACATCTATATACAAGAAATGGCTGATAAACGTGCAAGGCATCGGCgtacaaaaaaagaagagaaggaCTTCGCCGACAGGAACACCGCTCTCGTCGTTGAGGAGGAAAACCAATTTCAGATATATGCCAGACAGGTCATCGAAACAGCTGGGAAGGCAGGGAGAAACACCTTCCCTCTCGTGAAGGCTGCCAGAGAGGGCATTGGAGGGGGTCTGGGGCCCGTGTTCGGTGGACTTAGACCTAGTTATCTAGTTCATGATGAGTCGGGGGTTGAGATGCCCAGTTACGTGAGCGGCACCACTCAAAACATCAAAGAGCTGAACGAGACCCCTGATATCCAACAGTCCAAGAAAAGACTTGGCTTCACCTCGTAAAACTTCACAACGTCCGGTTGTTATAATGACTCTGGCGTACTATTGCAGTAATAAagattttatgcaaaataattgtcatttctgtgtttagaaattaa

Function

symbol description
ccdc173 Orthologous to human CCDC173 (coiled-coil domain containing 173).

NR:

description
peptidyl-prolyl cis-trans isomerase G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248298.1 True 1987 mRNA 0.48 9 24728368 24733782

Neighbor

gene id symbol gene type direction distance location
fastkd1 NA coding downstream 638 24717610 ~ 24727730 (-)
lrp2a lrp2a,lrp2 coding downstream 61201 24571862 ~ 24667167 (-)
abcb11a abcb11a,LOC107677906,LOC107674755,LOC107564151,LOC106581787,LOC107744834 coding downstream 169625 24533877 ~ 24558743 (-)
spc25 spc25,LOC107707602,LOC107564152,LOC107677909,LOC107708316,LOC107674771,LOC107566753 coding downstream 195320 24529672 ~ 24533048 (-)
stk39 stk39,LOC107707604,LOC107708317,LOC107558608 coding downstream 246281 24425526 ~ 24482087 (-)
mettl5 mettl5,LOC107744838,LOC107739664 coding upstream 21106 24754888 ~ 24758657 (-)
cxcr2 LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305 coding upstream 27759 24761541 ~ 24764855 (-)
LOC122351585 LOC107656512,LOC107744835,LOC107596607,LOC107739743,LOC107688961,LOC107564147 coding upstream 34503 24768285 ~ 24772259 (-)
LOC122351587 NA coding upstream 51121 24784903 ~ 24786237 (-)
zgc:92380 zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632 coding upstream 55724 24789506 ~ 24797054 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding downstream 157256 24564881 ~ 24571112 (-)
G73077 NA non-coding downstream 207060 24513094 ~ 24521308 (-)
G72980 NA non-coding downstream 442678 24253362 ~ 24285690 (-)
G72984 NA non-coding downstream 444203 24281991 ~ 24284165 (-)
G72929 NA non-coding downstream 747130 23926223 ~ 23981238 (-)
G73160 NA non-coding upstream 5544 24739326 ~ 24745938 (-)
G73175 NA non-coding upstream 42378 24776160 ~ 24778655 (-)
G73179 NA non-coding upstream 67256 24801038 ~ 24801377 (-)
LOC122351686 NA non-coding upstream 78534 24812316 ~ 24821062 (-)
G73186 NA non-coding upstream 105824 24839606 ~ 24839961 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 447660 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 768043 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 797039 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2217061 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2504701 22171463 ~ 22223667 (-)
G73201 NA other upstream 293803 25027585 ~ 25030965 (-)
G73301 NA other upstream 614996 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 722632 25456414 ~ 25458742 (-)
G73347 NA other upstream 1056735 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 1060301 25794083 ~ 25853303 (-)

Expression


Co-expression Network