olig2 (olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629)


Basic Information

Item Value
gene id olig2
gene name olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15940890 ~ 15943090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248302.1
AAACAGCCCTCGTCATCCTCGGGCGTGCCAAACACAAACGGTGCACGGGTGAACTGGAATAACGAGTGAATTCTGCAAAGCCGCACACAAGCACGCGCTTGCACCTGCTACCGGAATATTGACATCTGCGAGAATCTGAGAGCGCACTGAACACCATGGACTCCGACACGAGCCGAGTGTCCAGTAGACCTTCTTCTCCCGAAGGCGACGATCTCTTCCTGTCTGCTGTCAAGAAATCCGTGGGTTTCTCCGGCGCCGTCTCCTCCACACAGAGCGATTCTCCTCCGGAGTTAAGAGGCGCGGACCTGCGGGGCGTCTCCAGCGCCGACGAGGACGCGATGTCTCTGAAGATGCTCTCCAAAAAGGACCGTAAACTCCTGTCCGAGTCCGAACTGCAGAACATGCGCCTCAAGATCAACAGCCGCGAAAGAAAACGCATGCACGACCTAAACATCGCCATGGACGGGCTCCGAGAGGTCATGCCCTATGCCCACGGGCCATCCGTGCGCAAGCTCTCCAAAATAGCAACCCTGCTGCTCGCGCGCAACTACATCCTTATGCTGAGCAACTCGCTGGAGGAGATGAAACGGCTCGTGAGCGAGATCTACGGAGGAGGGAGCGGGGCTCATCACACCGGCTTCCACCCGTCCGGTTGTGGCACCCTTACGCACGCGGCGGGCGCTCCGTTACCGGGTCACCCCGCCGCTGTCTCGCACTCGTCTCACCCGGTGCACCATCCTCTGCTTCCACCAGCAGTCTCCACCGCCGCTTCTCTCACCGGCCCGGGTCTCTCAGCCGTCAGGCCGCATCACGGACTGCTCAAGGCACCGTCAGCCGGCGCTGGCGCACTCGGCGCTGGCTTCCAGCATTGGGGCGCGGGGATCCCGTGTCCGTGCAGCATGTGCCAGGTTCCTCCGCCTCACGTGTCCGGTATGAGCACCGTCAGCATGCCACGACTGACTAGTGACTCAAAATGAAGCACTGAACTTTGATAAAAGAACTCTGAGGCGCAACCATagacttttatatattaaagctGTATTATCTCGTGTTTATCAGTTTATGGCTGAACAATTTGTTTTTGGAAAGCACAAATAGGTCTGAAGCGAAGGAAATGGATCAAAGCCACTAACATAGAGTTTTCTAACACTAGAGATATTAGGTTTACTATCCATGTGCATTTCTGTGTATGAAGTTTGTGAAAATGGCATACCTTACTCTCTTTAGCCTTCGAACGCTGGACTGCTATTTACTAAATAGGTATAATGCGAACCTTAGAAATTTATagcatacaattaaaaataaatgaaaacttacAATTCATGCTGCAGTTGAAGAGGGCTAAATAGTTTAATGAGCCATTAATATTAGACGTTATACATTAAAAGTCCTAGCTTTGGAAAAATGGGACTGCACTGTGTAAATATGTAGATTGCATTTGTACAGATATTGAGAGATTTTATATTACCTTCCCCAGTTTATGTTTGGGGTCAGAATTCATTTGCCAAGCGCTGTCTTTAACAGGAAAGATGCACCTGTTCGTTCCTGcactgtttttctctctgtgtctttatATCTTCCTCTTTCTCCCTTTAGTTTTCTGGCCttccatcttttatttttttttgtcttttctttctgcACAAGCATACCCGTCATGGCCGATGCGAAGAATgatcaacttttattttttataataaagtgtaaaatgatatttatttacttattttgatggtattttcaaattaatgtgCGGTGAATGTTTGAGTcctaactgtaaaataaatgttttaaaattgtgcattta

Function

symbol description
olig2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; nervous system; neural keel; neural plate; and neural tube. Orthologous to human OLIG2 (oligodendrocyte transcription factor 2).

NR:

description
PREDICTED: oligodendrocyte transcription factor 2-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248302.1 True 1807 mRNA 0.48 2 15940890 15943090

Neighbor

gene id symbol gene type direction distance location
olig1 olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892 coding downstream 8354 15930621 ~ 15932536 (-)
ercc1 ercc1,LOC107570013 coding downstream 27320 15909284 ~ 15913570 (-)
LOC122351156 LOC107731741,LOC107569997 coding downstream 33323 15906028 ~ 15907567 (-)
LOC122351158 LOC107690624,LOC107595883 coding downstream 36707 15902347 ~ 15904183 (-)
dnajb11 dnajb11,LOC107595843,LOC107690604,LOC107719809,LOC107659888,LOC107731764,LOC107569729 coding downstream 41738 15894122 ~ 15899152 (-)
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding upstream 20704 15963794 ~ 15966467 (-)
LOC122351640 LOC107719827 coding upstream 23673 15966763 ~ 15973561 (-)
hpxa LOC107690487,LOC107719811,LOC107595840 coding upstream 31475 15974565 ~ 15978301 (-)
LOC122351503 LOC107731735,LOC107690619,LOC107690492,LOC107595881,LOC107570033,LOC107719821 coding upstream 55051 15998141 ~ 16006044 (-)
fhip1b fam160a2,LOC107690600,LOC107731760,LOC107690485,LOC107569793,LOC107719813 coding upstream 63090 16006180 ~ 16024933 (-)
G70660 NA non-coding downstream 178221 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 296614 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 302454 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 519313 15418999 ~ 15421577 (-)
LOC122351294 NA non-coding downstream 678214 15256988 ~ 15262676 (-)
LOC122352066 NA non-coding upstream 5023 15948113 ~ 15953976 (-)
G70894 NA non-coding upstream 175192 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 662277 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 667180 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 670027 16613117 ~ 16613424 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 169026 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 541453 15389218 ~ 15399437 (-)
G70549 NA other downstream 634915 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1568216 14359646 ~ 14372674 (-)
G70317 NA other downstream 1687114 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 777714 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 874050 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 943663 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1292782 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1421097 17364187 ~ 17521560 (-)

Expression


Co-expression Network