wnt6b (wnt6b,wnt6,LOC107562106,LOC107663826,LOC107560470,LOC107672249)


Basic Information

Item Value
gene id wnt6b
gene name wnt6b,wnt6,LOC107562106,LOC107663826,LOC107560470,LOC107672249
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8942859 ~ 8961374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248305.1
CAGAACCGTTTTTTTCCTGTATGACAAGGTTCCTGACTCAAGCCCCGGGCGACGTCACTGAGTGGGTGATGAGCTCTGAGTTTCTAACACCACGAGAAAAAGGTCCCCAGCTGAAGGCAGGAAAAAAGCGTGCACGAGAGGAGCGCGAAATGCCTCCTAGACGTCTACCTGTTTGGATCAGGATGAGATCTGGAGCACTCGCAGAAGAGCGCGCGCACTCAGGTTCAGCACATGGCACTCAGATCCACAGTTCTGCGCTTCAGAAGAACAACTGAATATTTTGCATTCCAAAACggaaactctttttaaaagttctGACATTTTAGCAGTTCAGGAGGTTAGACTGCATTCCATCAAGCTCAAAATCTAAATGCGCTTCTGCCCGGATTTCCCCCTCGTTTTATCTGCTCTTGCTGGATGAAGATCTCCAAGAAGTAAGAATGAAGATGCTGACCACTTTTCAAGCGGATTTTGCGATCGTCCTCACCAGATGATGTGCTTCTTGGAAGTGTATTATTCAGGGGTGCTGAATCTCCTCAGAAATCACCAAACTTTCTCCCAGGACAAGCCTCTTTTATCTCCGGACTAGTTCTTCAGCATCAGACCTCATACTTTTGTCTTTCAAAAGGCATCTGACAATGACGATTCCGCTTTCCAGAACGCAACTTGCCCTCTTCTTTATCCTGCTTTGTCCAGTCAACATTATCGGGCTCTGGTGGGCAGTGGGGAGTCCCTTGGTCATGGACCCAAACAGCATCTGCAGGAAGACCAAGCGTCTGGCGGGCAAGCAGGCCGAACTGTGCCAGACCCAGCCAGAGATCGTCAATGAAGTGGCCAAGGGCGCTAAGCTGGGCGTGCGAGAATGCCAATACCAGTTCCGCTTTCGACGCTGGAACTGTACCAGCCAGAACAAGTACTTTGGCAAAATCCTCCAGCAAGACATCCGAGAGACAGCGTTTGTGTATGCTATCACGGCGGCGGGTGTGACGCATGCAGTGACTCAGGCCTGCAGCATGGGGGAGCTGCTGCAATGCGGCTGCGAGGCCACACGGAGCAGAGGGCCACCCCCGCGTTTAGCCAGTGTGGGCCCAACCGAGGGGGTCAAGTGGGAGTGGGGTGGCTGCGGAGACGACGTGGAGTTCGGCTATGAGAAGTCCAAGCAGTTTATGGACGCCAGGCGGAGGAAGGGCAAGAGTGACATCCGCACGCTCATAGACCTTCATAATAATGAAGCCGGTCGACTGGCGGTGAAGAATTATATGAGAACTGAATGTAAATGTCACGGATTGTCTGGCTCTTGCACTCTGAGGACCTGCTGGAAGAAAATGCCTCACTTCCGCGAAGTGGGCGACCGCCTGCTCGAGCGCTTCAACGGGGCATCTAAAGTGATGGGTGGGAATGACGGTAAGACTCTCATTCCAGTCGGGCAGAACATCAAACCCCCAGACAAGCAAGATCTAATCTACTCGGCCGAGTCGCCGGACTTCTGCCTGCCCAATCGTAAGACAGGTTCTTTGGGGACACGCGGGCGGATGTGCAACAGCACGGCGCTGGACGTGAGCGGATGTGACCTTCTGTGTTGCGAGCGGGGCCACCGCGACGAGACGGTGGTCCTGGAGGAAAACTGTCTCTGCCGTTTCCACTGGTGCTGCGTGGTCCAGTGTAAAAAGTGCTTGGTCAGGAAGGAACTGAGCTTGTGTCACTAAGCGAGAACCCTTGATAACGGGATAATGAGAAGAGCGAGGACAAGAACAAAAGAATCTAGAACATTCCAGATTCATGCGTACACATTTCAAACCCTGAGGCTTTGGGAAAGCCTAGAGGAGTGTCTGACTTGTGATTCACCCCTTAGAAAACCCAGGAGCGCCAGTCTCAATgactattttagattttaggaGGGGTTCTTCAGCTGTGAAGTTGAGACATTCAGATATCTTCTCATCAGAGGgcttttgtgtgtattttatgttaGATCAGCCcactatacagtatattatgagTGCAGACTCATAAGCGCATCCACATCAGCACCACAGCCATGGTGTAATGACTGTTTATGTTCTGAAGTGACAGAACATCAAGAAAGGGATATTAGGCATGTGCTCTGTAAAGCAGGCTGGATATGAAACAAAGACGGTTATTTATAAGCATTTCATATCATCATGACTACTTTTTGCGATTAACGCCCtgtcattttctttcaaaagcacTTTGAGAACTTTTAACAGGAAGAGTAAAAGCCTGTTTTACTCTTAAACTCAAAGGTAAAAAGCAAATGCAAGAGAAGCAACATGTAAAAACTCTTTATCTTTGTGAGATATTTAATCTATGGGgcttttaatgcacttttactGATACTGATCACTATTTTTCATCGGTTTGCTCCTTAGTATAATGCATTTTCAGTGGTTTGTTTCAGTTTGTGTTGGTTTTTAAGAGTTCTTATAATGTTGACCTCATATATATGCTCTGAAAACCTTTCAGTACACTAACTGCTCAACAGTTctcaaaaacaattataactGATCATTAATGACAATAATGACAGGAACGAATGAAaaattgtcattgttttatcacctctttgttttcatgttttttttcaaaggatCTCTCACTGGACTGAAGTTTTAATCAAGTCAGGTCATCATTTCAACACCATGTTCAATTGTTTTAGTGTCATCCAAATGcattatgtttgaaatataatatttatgcagTCTGTACAGTTAATGAGATCAGAAATGTCAAGAAACAGACATAAAGAATGCAGAGCTTCACAAGCTACTTACAGGGTCAGCCATGAGACTTTCATCAAGTGTTAATCTCAAGCACCCTGTCCTTTGTTTGGAATGTATTGCATTTTTGGAAAATACCTTCACAAGGTAGCATCTGGTTATCTGAGTTTGCGCTTGTGAGCCACAGACCAttgagaaatataatttttcatgcATTAGTTTTAGGTGCATAAGTATAATGGACTGAAAAATGACAGCATGTCCGCTAAATGTAAATTAAGATGAAATTTGTCTTATGAATGACTTGAGTTCATATCTATTTATCTTAGACGTTGTCTATTTATCTTAAATTTGTAGTTCATCTCTCTTCCGCAACCtcatatctgaaaaaaaaacatggtggAAAGATGTGAGAGATTATTTACTGCTCTTCAAAACAACTGTTTATAAAGCGACCTTGCAATAATTCATACCAGAACTGTATATTTTGGATATTTAATCACAATGCATTTGAAAGGaagatttcagattttaaaaactgaaGACTGGAAGTGAGAATCCTTCTTATAGCTGCTcatcactgaataaaatacac

Function

symbol description
wnt6b Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in eye. Orthologous to human WNT6 (Wnt family member 6).
wnt6 Predicted to enable cytokine activity and frizzled binding activity. Involved in odontogenesis of dentin-containing tooth; positive regulation of gene expression; and positive regulation of tooth mineralization. Predicted to be located in several cellular components, including Golgi lumen; endocytic vesicle membrane; and extracellular exosome. Predicted to be active in extracellular space.

NR:

description
PREDICTED: protein Wnt-6

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00445 WNT6; wingless-type MMTV integration site family, member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248305.1 True 3333 mRNA 0.44 4 8942859 8961374

Neighbor

gene id symbol gene type direction distance location
wnt10a wnt10a,LOC107663825,LOC107672309,LOC107562105,LOC107560469 coding downstream 8528 8919863 ~ 8934331 (-)
cdk5r2b LOC107562111,LOC107749900,LOC107672300,LOC107560468,LOC107752915,LOC107663905 coding downstream 63771 8876681 ~ 8879088 (-)
si:dkey-69o16.5 si:dkey-69o16.5,LOC107663837,LOC107749873,LOC108411906,LOC100708275 coding downstream 115810 8824663 ~ 8827049 (-)
tmem41aa tmem41aa,LOC107749879,LOC107596517,LOC107663880,LOC107668406,LOC107752878,LOC107593004,LOC105908658,LOC108410768 coding downstream 432573 8506932 ~ 8510286 (-)
glb1l glb1l,LOC107596522,LOC107677787,LOC107752925,LOC107749887 coding downstream 587003 8349238 ~ 8355856 (-)
asic4a asic4a,LOC107672268,LOC107560474,LOC107663852,LOC107749871,LOC107571863,LOC106586149 coding upstream 17144 8978518 ~ 9048802 (-)
gmppaa gmppaa,LOC107556449,LOC105902665,LOC106581839 coding upstream 188818 9150192 ~ 9155280 (-)
dars1 dars,LOC107676220,LOC107663896,LOC102778528,LOC107706104 coding upstream 198935 9160309 ~ 9184553 (-)
cxcr4b cxcr4b,LOC107749897,LOC107663919,LOC107706106,LOC107676218,LOC107568342,LOC107556439 coding upstream 225203 9186577 ~ 9188474 (-)
nxph2a nxph2a,LOC107751612,LOC107663841,LOC107556444,LOC107720323,LOC107658205,LOC107558041 coding upstream 649645 9611019 ~ 9626167 (-)
G68857 NA non-coding downstream 23113 8918541 ~ 8919746 (-)
G68844 NA non-coding downstream 118472 8822356 ~ 8824387 (-)
G68839 NA non-coding downstream 125241 8816520 ~ 8817618 (-)
G68830 NA non-coding downstream 137454 8802385 ~ 8805405 (-)
G68826 NA non-coding downstream 141110 8793861 ~ 8801749 (-)
G68948 NA non-coding upstream 276743 9238117 ~ 9238462 (-)
G68981 NA non-coding upstream 645930 9607304 ~ 9610739 (-)
G68987 ugt1a4,LOC107556441,LOC107663842,LOC107663839,LOC107558044,LOC107658227,LOC107720327,LOC107558046 non-coding upstream 670659 9632033 ~ 9652602 (-)
G68988 NA non-coding upstream 692742 9654116 ~ 9654567 (-)
G68994 NA non-coding upstream 711198 9672572 ~ 9672901 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 848012 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 918187 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1788905 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 2681790 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 2842947 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 946814 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 1472133 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 1553898 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 1718784 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 2435292 11396666 ~ 11493120 (-)

Expression


Co-expression Network