LOC122351330 (LOC107571834,LOC107657380,LOC107716910)


Basic Information

Item Value
gene id LOC122351330
gene name LOC107571834,LOC107657380,LOC107716910
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3906741 ~ 3910820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248310.1
CGGAGCATCAAGCCTTTTCCAGGGGGGAGAAACCACAGAACAGGCTTCCGACCCAGAAGCGGGAGGTAGTTCTGGTGGTTGTGGAAGAATGTAGGGATTCGCCGGTCTCCATTCCAGTGCAGCTGTTACTTAGCCACGGCTGAAGGACCATCTCTGCCAGGAAACCCAGTGAAGAATTTTCTGGAACTTTGGACTTTGCCTTACGTTGGATAAACTACACCAAACAAAACTCGCAGCAAAGAGGGAACTGGAACACAAAGAGCTGAATGACGGAAAGGGCATCCTGATGAGGAACAGCTGCGATCGTTGTTTCCCCTCTTTTTATTGTGAGCACACAGACACGTGTATGTGCTGTTGTGCAACTTGATTCAATTACAGATATcaaatggcattttaatatgGGTTTTTAGTTCTCGGTTTTCGTTATGCAACAGTCCACggatttttaaaaaggtctAATGTGATGCAGTAAGTAAGAGCTGGCTCACACTGACCACACAGAGTAAAGAGATTGGCATGAGTTGGGTTATTATCAGCTTTGGACAACATGCATCGTCTGCTTTGGAGAACAAATGTTGACTTATTCTTCTGTCTGCTTTTGATTCATCTCAAATGCAACAACATAATAGGTGGAGGTCTGAGGATTATTGACCACGATGAGTCAGTCAAAAAAGGAGGAAATATCACTTTGTTTTGTCGTCTGATTGAGACAGAGGAGGATTTAACTCGCATTGTCTGGCAGAAACAGACAAGAGAAAACCTTGAACAGGAAACATTCTTAATTGTTGAAAAAGATGGTAAAACTGAACACAAAAGTGATTTACTGGACAAGGTCAAATTTATTGGGaatattaaagagaaaaatggaTCGGTTCAGCTGCTGGGAATGACACTGCTCGATGATGGGGTGTATACTTGTATCTTCATATTTCCTAGtggacaaaaacagacaaacatcaATGTCACCGTGCATGTTCCTCCGGTGGTGAACGTTGTCGGGAAGACGCATGTTTCAGGTCACGTCGACATTGTTTTGGCATCATGCGTTGCTTCCAACGGCAGGCctgcagcagaagtgttttggaGATTAGGATCCGAGAGTCATTTGGGAAGGACAGAAACCAGCTACACCGAGCACACGGATGGGAGAGTCACGGTCGTGTCCCACGTACTCGGTGCTCCAACCAAAGATTTAAACCAGAAGAAGATCAAGTGTGTGGTAAACCACAGCACACTGACGAAGGAGCTAGAGTTGGACTACATAATAAACGTCCACTATCCTCCAGAATTGGTGGTGATCTCTCCTGAGGATCCAGCACAGACTCAAGAATATCTTTGTTCGGTGGATTGTAACCCAACACCAACCAGCTACACGTGGACCAGATTGAACGGAAGTACTCCTCGTTTTGAAGGAAACAAGCTTTTCATCCCAAAATCGTCTTCTGGTTTTAATGGTGTATACATCTGTACAGCATCAAACCAGTATGGAAGTGCTTCAGGGGTCCTTTATGTGAATAACACCGGATCCACTGCTGACTGTTGGCTTCTTCTCGGCTCGGTCTTCAGCTGTGCCGTCCTGTGTATCCCTCTGCTTTACATATTTAGCGGgggtaaaaaaaagtaaaagtacagttaaagtaaacatttaatttcgTCCTGATTAGCTGATCATGTAGAAAAATGTGATTAGATTAAGACAATAGATTAAGTAAACAGGAAATCATGCAGGGTCATCAAACCATCTGTaggtgtcaccaagccagcagagggagccctgacctctgagtgatctgcattcactccctctgcgacaacttcctgtctgagaACTATAAAGTCAGTAGCAGGCCCCttacctgcaggttgcattgttcgcctggtcttttgttgttttcctagttccttgtgttttccgagttcttgtttccctggttttgatcctgcctgtctttggatactgtgattgtttg
>XM_043248311.1
CGGAGCATCAAGCCTTTTCCAGGGGGGAGAAACCACAGAACAGGCTTCCGACCCAGAAGCGGGAGGTAGTTCTGGTGGTTGTGGAAGAATGTAGGGATTCGCCGGTCTCCATTCCAGTGCAGCTGTTACTTAGCCACGGCTGAAGGACCATCTCTGCCAGGAAACCCAGTGAAGAATTTTCTGGAACTTTGGACTTTGCCTTACGTTGGATAAACTACACCAAACAAAACTCGCAGCAAAGAGGGAACTGGAACACAAAGAGCTGAATGACGGAAAGGGCATCCTGATGAGGAACAGCTGCGATCGTTGTTTCCCCTCTTTTTATTGTGAGCACACAGACACGTGTATGTGCTGTTGTGCAACTTGATTCAATTACAGATATcaaatggcattttaatatgGGTTTTTAGTTCTCGGTTTTCGTTATGCAACAGTCCACggatttttaaaaaggtctAATGTGATGCAGTAAGTAAGAGCTGGCTCACACTGACCACACAGAGTAAAGAGATTGGCATGAGTTGGGTTATTATCAGCTTTGGACAACATGCATCGTCTGCTTTGGAGAACAAATGTTGACTTATTCTTCTGTCTGCTTTTGATTCATCTCAAATGCAACAACATAATAGGTGGAGGTCTGAGGATTATTGACCACGATGAGTCAGTCAAAAAAGGAGGAAATATCACTTTGTTTTGTCGTCTGATTGAGACAGAGGAGGATTTAACTCGCATTGTCTGGCAGAAACAGACAAGAGAAAACCTTGAACAGGAAACATTCTTAATTGTTGAAAAAGATGGTAAAACTGAACACAAAAGTGATTTACTGGACAAGGTCAAATTTATTGGGaatattaaagagaaaaatggaTCGGTTCAGCTGCTGGGAATGACACTGCTCGATGATGGGGTGTATACTTGTATCTTCATATTTCCTAGtggacaaaaacagacaaacatcaATGTCACCGTGCATGTTCCTCCGGTGGTGAACGTTGTCGGGAAGACGCATGTTTCAGGTCACGTCGACATTGTTTTGGCATCATGCGTTGCTTCCAACGGCAGGCctgcagcagaagtgttttggaGATTAGGATCCGAGAGTCATTTGGGAAGGACAGAAACCAGCTACACCGAGCACACGGATGGGAGAGTCACGGTCGTGTCCCACGTACTCGGTGCTCCAACCAAAGATTTAAACCAGAAGAAGATCAAGTGTGTGGTAAACCACAGCACACTGACGAAGGAGCTAGAGTTGGACTACATAATAAACGTCCACTATCCTCCAGAATTGGTGGTGATCTCTCCTGAGGATCCAGCACAGACTCAAGAATATCTTTGTTCGGTGGATTGTAACCCAACACCAACCAGCTACACGTGGACCAGATTGAACGGAAGTACTCCTCGTTTTGAAGGAAACAAGCTTTTCATCCCAAAATCGTCTTCTGGTTTTAATGGTGTATACATCTGTACAGCATCAAACCAGTATGGAAGTGCTTCAGGGGTCCTTTATGTGAATAACACCGGATCCACTGCTGACTGTTGGCTTCTTCTCGGCTCGGTCTTCAGCTGCGCCGCCCTGTGTATCCCTCTGCTTTACATATTTAGCgggggttaaaaaaaagtaaaagtacagttaaagtaaacatttaatttcgTCCTGATTAGCTGATCATGTAGAAAAATGTGATTAGATTAAGACAATAGATTAAGCGTTATCATAAACA

Function

NR:

description
PREDICTED: nectin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248310.1 True 1970 mRNA 0.44 7 3906741 3910820
XM_043248311.1 False 1724 mRNA 0.44 7 3906741 3910046

Neighbor

gene id symbol gene type direction distance location
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 139204 3760833 ~ 3767537 (+)
rsph1 rsph1,LOC107749034,LOC107728239,LOC107670901,LOC107663994 coding upstream 147526 3754816 ~ 3759215 (+)
fbxl3a fbxl3,fbxl3a,LOC107549764,LOC107664003,LOC107670904 coding upstream 154118 3744006 ~ 3752623 (+)
mycbp2 mycbp2,LOC107549765,LOC107664005 coding upstream 164002 3670562 ~ 3742739 (+)
vwa8 vwa8 coding upstream 322050 3507925 ~ 3584691 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding downstream 15071 3925891 ~ 3945608 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding downstream 37198 3948018 ~ 3981211 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding downstream 198830 4109650 ~ 4112225 (+)
hoxd13a NA coding downstream 470704 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 474619 4385439 ~ 4387003 (+)
G67448 NA non-coding upstream 76969 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 260127 3642961 ~ 3646614 (+)
G67418 NA non-coding upstream 268659 3601318 ~ 3638082 (+)
LOC122351601 LOC107749038,LOC107663997 non-coding upstream 287435 3606570 ~ 3619306 (+)
LOC122351351 NA non-coding upstream 314501 3586803 ~ 3592240 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding downstream 35714 3946534 ~ 4031820 (+)
G67604 NA non-coding downstream 127776 4038596 ~ 4038822 (+)
G67606 NA non-coding downstream 153817 4064637 ~ 4064961 (+)
G67637 NA non-coding downstream 245836 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 251536 4162356 ~ 4165072 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 626689 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 710123 3194773 ~ 3196618 (+)
bpifcl bpi other upstream 2170421 1713812 ~ 1736320 (+)
G66795 NA other upstream 2771752 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 3007362 858680 ~ 899379 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 2818 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 37216 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 70526 3981346 ~ 3985962 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other downstream 209707 4120527 ~ 4127013 (+)
G67630 NA other downstream 230234 4141054 ~ 4222171 (+)

Expression


Co-expression Network