tspearb (tspearb,LOC107749903,LOC107677782,LOC107752923,LOC107593006,LOC107668351)


Basic Information

Item Value
gene id tspearb
gene name tspearb,LOC107749903,LOC107677782,LOC107752923,LOC107593006,LOC107668351
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8442360 ~ 8452673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248312.1
CACATGGGGTGTTGTTGAAGACATGGGTTGATGGGTTGAGATGCAGGTGAAGAAACGATTGACTGAAGGGAGATTTCCTTGACAAGTGGTCCTCGGGGTAAGGCTCTCATCGCAGCGATCGAAACGAGCGATGCCGTTTAGAACAAGAGcaacctgacacacacacacacacacacacacacatgtacaacACTGGGGAATTCCTCACGACACCTTAAAGACATGAGATAAGAGCTGGAAAgagcctctttctctctctcttctgtgtgCTTCACTCGCCCCACCTTTCCCTCTCTTTAACGTCGACCCCTCCTTTCTACAGCTGACTTATTCTCATTTAAATGTCTGCGGGGTAAAACACCTCTCCCCGCTCATAACTCACAGGTGAAGTTTACACTCCCCTTCATAGCACACTGACATGTACAGCAAAGCAGAGAGACCTCAGCCGGACACCGTTCGAGGAGTGCGTTCTTCACAGCCGTGGAGTTTTGACAGACTCTCTTGAGAGTTTGGATTTGCGATAGCGCAAAATGCACTGGCATCGTATTCTGCGTTTTTGATCACGCATTCACTGTAATGCTTATGAAAAAAGAGGAGGACGGCAGCATCTTCGGGAGTGGGATGCCAGTTTGATTAGGAGTGACACCTCAGCCGTTTCCTGGACACCTTCTCATCCTCACGGGCCGGATGTAAGGATGGTCTCTGGGCTTTGAGGATCGCTCTGTTCGAGTCTGGCTGTGTGTGGATGGAGCTGAGAGAGCGGAGACCCTGATGTcggagctgctgctgctggcctGTGTGCTCCTTTCCTGGATCATCACCTGCCAGTCTGGACCATGGAGGCCTTGCACAGATCTATTACCACTGGATCTCCTGTCCCGGGTGCTTCCTGTGTCCAGCAGGGCTCAGGATGGGATACGTATGGTCCAGTCCAGAGGTGCTCGTGGTTTTCAGTTTTCTGGATCTCCACAGCTGTTCAGCTTCCCTGCCTCTCAGCTCTTCATTAATTGTAACTTCTTTCCCGCCGAGTTCTCCATCGTCGTCACACTGAAAATCCCACAAGTGGCTCCTGAGAAGAGTGAATACATCTTCACACTGTTGGAGGGAGATTCAGATGAGCCGCTCGTCGGTCTGCGTCTGTCCCAAAACAAGTTCCACTTTCTACAGAAGGGTCACGGCAGCAGGAGGCGCAGCACTTTTAAAGCAGTGGGGCTGGATGATAACCGCTGGCACACTGTGGTCTTGGCTGTTACAGGACGCTACACCATACTCACTGTGGACTGTGGCTCACCTCTAGAGCTTGTTTGAAAGACCTTTCCCGATGATCTTGATACAACTGATTCCACATTCTTCATCGCCAGCAGAAGAAGATGGAACGGCCTATTTTCTggtctCTTACGACAGCTAGTTTTGTTACCGGGTTCAGATGCTACCTCACAAATTTGTCCCTCATCTGAGCCCCGGCTGTCTGCTCTCTCAGTTCCTAAGTCCCTCTTACACCTGCCAATCAAACCATCATCCGCTGACCTTCCCCTCCACCCTTACGAGGCAGAGGTTCGGGTGACTGCGGGTGTGATTCCTCCCTGTGGACTCTCAGAGGAGGGACAGCTGTGGTTTAACACACTGAAGAGAGGACTGTTTCTCTGTGATGGGATTACATGGCTCAGTATGCTGCAAGGGAAAGAGAAGCTGGATTACGTGGAGGATCACCAGGATTTATTTACCAACTCTGAGACATTTGACATTGAGGTTTTCCACATCACTTCTGTAGGGCTTTTCATGGCGACCGCCAACCGTGACTCCCACCTCGGATCAGGAATTTACAAATGGACAGATGGGAGGTTCGAACGATATCAAAACATCAGCACCTATGATGCACAAGCATGGCAGTACTTCACAGTGGGCAAAAAGAAGTTCCTGGTTGTTGCAAACTGCAGAAGCGAGGATGCAGAGGACCAGGAGCAGTCTGTGATATATAAGTGGAGCTCAAGGAAGCTGAAATTTATTCGCTATCagactctgaacacacacagcGCTCGTGACTGGGAGGCTTTCAACATTCAGGAAGAAACTTTCCTCGCGGTGGCCAATCATAGGCAAGGAGAGAGAAACCATAATATTGACAGTGTGATCTACAAGTGGAACGAGGTGACACAGTTTTTTGAGGTCAATCAGACGATCCCCACCACTGGTGCTTACGATTGGGAGTTTTTCGCCATCGGCCCATATTACTTCCTTGCGGTCGCTAACACTTTCAATGGAAGATCTACAGTCATTGATTCTACCATCTATATCTGGCTGGGAGGGATGTTTCAGCCTTATCAGTTCATTACAACCTTTGGGGCGATCGACTGGGAGATGTTCCAGATTGAAAACAGGGTTTTCTTGGCGGTGGCGAACAGCCAGATGCTCACCGAAGACGGTAAAATCCTGTACTCCATCAACTCCACCATCTATGAGCTCAGCATGACATCTCAGACCTTCATCAAGTTTCAGGATATTGAAACGAACAGTGCTTTGGACTGGGAGTATTTTACTGTGGGAGACGACAAGTTCCTGGTGGTGGCCAACTCTTACGATGGAAACTCATACTCTCTTAATAGTGTTATATACAGGTGGCAGGGTTATGAGGGCTTTATCCCGGTGCACAGACTGAGCACCAATGGCTGCAGAGATTGGGAATATTTTAACACAACCGATGGCTCCTACCTCATCTACTCCAGTGCCAGAGCTGCTCTCTCTAAAGTCCTTAAATTAAGGACAGTCTAGTGGCACTGGACACATGGACTCTATCTGCTGCCAGAAACAGCAACTCAAAGCAAGAACACAACTGAACTCATAAATCAGACGTTCTTCAATGCAAATGTTATCCAAATCTTAAATCAGCGTATCACATGATAACACTTTAACGCTTAATGACATACCTTGAAACTAGCTAAAGGATGAATCTCATCACTAATGAATCGGTCCGCTGACCACCTAAAAATAACAGCACACTCACTAAACATTCAGAAGACTTATACCTGCACATATTTGCACACGGATCATCAGTATGCTTTGttgattaaaatgtcattatgtCCTGTGGTTATGCATCATTACTCTGCacatgaagagagagaacattTTATGGATGACTGGAAAAATAGTTTTATCAGCCAACAAAGAAACTGTATCTAACTGTACTGTACCGTCTGTAAGCTAatgatttacattattttttattagaagGCCTTTTAATTGAAGTGTAcaatatatgcaataaatacaattaagacattatttataatagataaataataataaaaaatgaggGATTTTAGTAATACACagactattttctttttatattataactatGACTAAGTTTAGAACTTGATTgtgttgtaaaatatatttggttttttcccctctgtattatattatattgcaatataCCTCACCCCGATTACATTAAACACTTTTCACGTTTGTTTTACTAAATTTATTAACCTTTTGGATTTGTCAAGAAATGC

Function

symbol description
tspearb Predicted to be involved in signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 98 and ectodermal dysplasia 14. Orthologous to human TSPEAR (thrombospondin type laminin G domain and EAR repeats).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24437 TSEAR; thrombospondin-type laminin G domain and EAR repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248312.1 True 3515 mRNA 0.46 12 8442360 8452673

Neighbor

gene id symbol gene type direction distance location
pttg1ipb pttg1ipb,LOC107749904,LOC107677780,LOC107596555 coding upstream 11746 8427846 ~ 8430614 (+)
myo10l3 LOC107677785,LOC107749884,LOC107752883,LOC107668373 coding upstream 15431 8366662 ~ 8426929 (+)
ankzf1 LOC107677786,LOC107749886 coding upstream 92835 8343222 ~ 8349525 (+)
LOC122351256 LOC107668397,LOC107593014,LOC107752910 coding upstream 239424 8176835 ~ 8202936 (+)
fzd7a fzd7,fzd7a,LOC107751502,LOC107752890,LOC107668396 coding upstream 269397 8170166 ~ 8172963 (+)
tra2b LOC107668395,LOC107677789,LOC107592988,LOC107749892 coding downstream 931 8453604 ~ 8459325 (+)
ehhadh ehhadh,LOC107596516 coding downstream 58039 8510712 ~ 8519346 (+)
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding downstream 68261 8520934 ~ 8528871 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding downstream 113781 8566454 ~ 8569997 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding downstream 198494 8651167 ~ 8702295 (+)
G68678 NA non-coding upstream 219543 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 236397 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 588082 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 1106001 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 1140865 7280767 ~ 7301495 (+)
LOC122351403 NA non-coding downstream 148051 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 373539 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 406800 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 594787 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 610447 9063120 ~ 9064676 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 8877 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 99609 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2469237 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2556607 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 2984831 5457458 ~ 5457529 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 8071 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 410714 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 414424 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 689919 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 703372 9156045 ~ 9160821 (+)

Expression


Co-expression Network