wnt10a (wnt10a,LOC107663825,LOC107672309,LOC107562105,LOC107560469)


Basic Information

Item Value
gene id wnt10a
gene name wnt10a,LOC107663825,LOC107672309,LOC107562105,LOC107560469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8919863 ~ 8934331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248344.1
TCCTGAAGACAGCAGATAGCTCTGTCTGAGTACTGATGTGTACACGAGTGTCAGATGATATCTCGGCGGATCCTCTCAGCGTCGGCTCGCGTTTTCATTCATTCCGAAAGCTCAAACTGATAGCTCCGGCAGGGAAAAAAAGTTGTGAAGCGGTTTCATGAATGAGGTATCACGACATCGCGTGGCACTCTCCagcatcatttcatttttggtcaGATTCGGGCGATCTGGAGGCGATCGCTGGAAAGCTGCGCGTGTGTTGGACGGATCTTCTCCTCAGACGGGAGAGTTGTTGTGAAAGAGTTTTGCCGAAgagcaccagcagcagcagcagcagcatggaTTACTTTTTATTTCGACTCTTCTGCTCTTTGGCTTTGGCGTCGCTTCTGGTTCAAAGGGCAGACTCAAATGAGATTCTGGGACTAAAGATCCCCTTTGACCCCATTCTCAATGCCAACACGGTGTGTTTAACCCTGCCCGGCCTGACAAAGAAACAGCTGGATGTATGTATGAGACATCCAGATGTGACAGCCTCTGCCATACAAGGCATCCAGATCGCCATCCACGAGTGCCAGCATCAGTTCAGAGGTCACCGCTGGAACTGCTCGAGCCTGGAGACCAGGAACAAGATCCCCTATGAGAGTATTGTCTTCAGCAGGGGTTTCAGAGAAAGCGCGTTTGCATATGCCATCGCAGCGGCCGGAGTGGTGCATGCCGTGTCCAACGCCTGCGCCATGGGCAAGCTGAAGGCCTGCGGCTGTGATGAGAAGCGCCGCGGGGATGAGGAGGCGTTCAGGATCAAACTCAACCGTCTCCAGCTGGAGGCCATCAACCGGGGGAAAGGCATGGTGCACGGCGTGATGGAACACTTTCCCGCCGACGCTCTCGGCCCCCAGGACTCCTGGGAATGGGGCGGCTGCAGTCCCAACGTGGAGTTTGGGGAGCGCTTCTCCAAGGACTTCCTGGACTCCCGTGAGACATACAGAGACATTCACTCCAGGATGAGACTTCACAACAACAGAGTTGGCAGGCAGGTTGTGGTGGACCACATGAGGAGGAAATGCAAATGCCATGGCACATCAGGAAGCTGTCAGCTCAAGACCTGCTGGCAGGTGACTCCAGAATTCAGAACGGTGGGCTCGCTGCTGAAGGAACGCTTCAATATCGCCACGCTAATCAAAGCCCACAACAGAAACACGGGTCAGGTGGAGCACGCCCACCCGACACACCGACGGAGAGCCAACATCAACGATCTGGTCTACTTTGAGAAGTCCCCGGATTTCTGCGAGAGGGACCCGGGGTCGGACTCTGCCGGGACGCAGGGCCGAATCTGTAACAAGACCAGCCAGGGAATGGACAACTGTGAGAGCCTGTGCTGTGGCCGGGGCCACAACATCTTACAGCAGACTCGCAGTGAACGCTGCAATTGCAAGTTCCACTGGTGTTGTTATGTTGTGTGCGAAGAGTGCAGGATAACAGAGTGGGTCAGCGTCTGCAAATGAAATAAGCAATCCTctattaaatgtacaaaaacaggAAAGACTGAGAAATCCCTCCCTTTTGCAATGGACTGCTGTTTCCGTGATTCGAATGGAAAGCACAAAAGCAGACTGAGATGAATTGAGTGCTACAGAAGTGTGCACATGTTTGCACACTGCATGGGTCCAAGCACAAGATTTCAGACTGATTTTGGACTTGCACTGCATATAATTTcagaaagtatttttaatttaaataaattaagaatatGGATATATTGTTGAGTATATTGCCAACAGAGCACTCATCGACACTATGTggtgttcattttatttcaattttcagAGAAATCAATGGCTCCTAGTCCTGTAATATAGCACCAAGCTGACACATGGGATTCCGGTACTTAAAgaagagaaatatatatatatatatatttataatttatacacacacccagtagtcaacatttgaaatggatcaaaactttaattcaattaaatttgtcCAAAAACGTAAAACCAAAATGCGTTCTTGTCTTGAAcc

Function

symbol description
wnt10a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within odontogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in caudal fin and nervous system. Human ortholog(s) of this gene implicated in Schopf-Schulz-Passarge syndrome and tooth agenesis. Orthologous to human WNT10A (Wnt family member 10A).

NR:

description
protein Wnt-10a

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248344.1 True 2028 mRNA 0.49 5 8919863 8934331

Neighbor

gene id symbol gene type direction distance location
cdk5r2b LOC107562111,LOC107749900,LOC107672300,LOC107560468,LOC107752915,LOC107663905 coding downstream 40775 8876681 ~ 8879088 (-)
si:dkey-69o16.5 si:dkey-69o16.5,LOC107663837,LOC107749873,LOC108411906,LOC100708275 coding downstream 92814 8824663 ~ 8827049 (-)
tmem41aa tmem41aa,LOC107749879,LOC107596517,LOC107663880,LOC107668406,LOC107752878,LOC107593004,LOC105908658,LOC108410768 coding downstream 409577 8506932 ~ 8510286 (-)
glb1l glb1l,LOC107596522,LOC107677787,LOC107752925,LOC107749887 coding downstream 564007 8349238 ~ 8355856 (-)
LOC122351780 LOC107677781,LOC107749905,LOC107596523,LOC107752886,LOC107668380,LOC107593025,LOC100003133 coding downstream 578403 8338994 ~ 8341460 (-)
wnt6b wnt6b,wnt6,LOC107562106,LOC107663826,LOC107560470,LOC107672249 coding upstream 8528 8942859 ~ 8961374 (-)
asic4a asic4a,LOC107672268,LOC107560474,LOC107663852,LOC107749871,LOC107571863,LOC106586149 coding upstream 44187 8978518 ~ 9048802 (-)
gmppaa gmppaa,LOC107556449,LOC105902665,LOC106581839 coding upstream 215861 9150192 ~ 9155280 (-)
dars1 dars,LOC107676220,LOC107663896,LOC102778528,LOC107706104 coding upstream 225978 9160309 ~ 9184553 (-)
cxcr4b cxcr4b,LOC107749897,LOC107663919,LOC107706106,LOC107676218,LOC107568342,LOC107556439 coding upstream 252246 9186577 ~ 9188474 (-)
G68857 NA non-coding downstream 117 8918541 ~ 8919746 (-)
G68822 NA non-coding downstream 84638 8761771 ~ 8835225 (-)
G68844 NA non-coding downstream 95476 8822356 ~ 8824387 (-)
G68839 NA non-coding downstream 102245 8816520 ~ 8817618 (-)
G68830 NA non-coding downstream 114458 8802385 ~ 8805405 (-)
G68948 NA non-coding upstream 303786 9238117 ~ 9238462 (-)
G68981 NA non-coding upstream 672973 9607304 ~ 9610739 (-)
G68987 ugt1a4,LOC107556441,LOC107663842,LOC107663839,LOC107558044,LOC107658227,LOC107720327,LOC107558046 non-coding upstream 697702 9632033 ~ 9652602 (-)
G68988 NA non-coding upstream 719785 9654116 ~ 9654567 (-)
G68994 NA non-coding upstream 738241 9672572 ~ 9672901 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 825016 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 895191 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1765909 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 2658794 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 2819951 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 973857 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 1499176 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 1580941 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 1745827 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 2462335 11396666 ~ 11493120 (-)

Expression


Co-expression Network