hoxd10a (hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206)


Basic Information

Item Value
gene id hoxd10a
gene name hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4394716 ~ 4397578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248345.1
TCTAAATACCGATTTAACAAAAGtgcaatgtttcttttattcagtttaGAAAATAGCAGCAGACAACACACACTGCATTACATGGATTGTTATATAGTAGTCCCGTTTTGAATTTCCTCTGCGCGTGAAACAGGCGACATCAGTGGTGTGGATTAGGGTATGGAtgaatctataaatataaagcacAGTGTTGCTTTTCGCCCTCGGTCCAGTTCTAGCCGCTCGGGCCCACGTCCGCCGCGCTTTGCCTGCTGAAAAAGTGAACTACGAGAAATTCCTTCCGACATTTCTCGTCTTGACCTTGAATCGGAGTTAAAAGAAAACCACGCAGACCCTGCCGAAAGCTCTCCTTTATTTTCTCGCTCCtcgcactttttttttttttttttttttttttttagcagtggtACACACGCGACGGTCCGGCGTCTTCGCGTTTTGTCTCAATCTTATAGAGTTCTGGAAAGGGTTTTAACGTTATTTTGGCCGTCTCGCAACCAATTTCAAGTCCTTGTTCTAGGTGTCGCTGTTGACCACGTCTGAAAGCCCGAACCACCCCGCCAGCGAGACCACGTGACTGGGAAGAGCCTGCGTCTCAAGGCCATTTTCAAATTTCATTGGCGAGAGCGTCATGTGGTCGCGGAGAGGCTCTTTGGGTTATACGGGGATTGTTTTGCTAGACATGTCAGCTTACAGAGGACACTACTctgcttcttaaaaaaaaaatagaaaaaaaaaaaaaaacccaaaatgtcCTTTCACAACAGCTCTCCTGCCGCAAACACGTTTTTGGTAGACTCCTTGATTGGCGCGTGCAGAACAGATTTTTATTCCAGCAGTAACATGTACATGCCAGCCACTGCAGAAATGGGAACCTATGGAATGCAAACCTGTGGACTCCTGCCGTCTCTTGGCAAACGGGGGGAAGTAAACCACCAAAACATGGGCATGAGCGTCCACTCGTACATACCTCAAACTGATAACTGGGCAGATCCGAGCAGGTCCTGCCGATTAGAGCAACCGCTCAACCAGATGTCCACCTGCACATTTTCACAAAGCATAAAAGAAGAAACTAACTGTTGTATGTACTCCGACAAGAGAGCAAAGGTCGGTTCGTCCGAGATACCCGCGTACTCCAACCTGATTCCAGAAACGTGTTCCGTCGATAGCCCCGAGATTCCGGTCCCCGGCTACTTTAGGCTGAGTCAAACTTACGCGACGGCGAAAAACCCGGACTATGACAGCGAGACGATGAGCCCGAACGCCACGTTAATGCAGCTGAACCGAGCGACTCCAAAGGCGCAGTCGACGCCCTTCACCGAGGCGGAAAAGAAGCTTTCCCGCGAGCGGGACACGAGGAGCTCTTCCCCGGCGCACAGTCCGGAGCCCGAAGTCAGCGCGCTGGAGGAGAAGCACTGCTCGACCGAGGCGTCCGTCTCCAGCCCTGAACTGCCGCACAGAGAAGGCAAAGAGCCCAAGAACGACACACCGACGAGCAACTGGTTAACCGCGAAGAgcggaagaaagaaaagatgtcCGTACACAAAACACCAGACCTTGGAATTAGAAAAGGAGTTTTTATTCAACATGTACCTGACTCGGGAGCGCCGTCTAGAGATAAGCAAAAGCGTCAACCTCACCGACAGACAAGTGAAAATCTGGTTCCAAAACCGCAGGATGAAGCTCAAGAAGATGAGTCGAGAAAACCGCATCCGCGAACTCACATCCAACCTCACCTTCTCGTGAGCGCCCCGCGAGCCTCCCTCCCCCCTCCCTCCCCGTTTGGGTCCGCGCGCGTTCTCCCGCGTGAACGCTGACACGAGGGCAGCGCGCGACGCTCTGGCTACCTTCACGTCTCGGTGTTGTGCTCGTCGCTAAACCTTTTGTCATTTGTTGCTACGTCTTTGATTGCATTCGAAACGTGAAGCCTTGTGTATTTCGGTATGTTTCACGGGGCATGACTCCGGCGTTTAACTTCCATAATAAGGCTGTTCCGAGCGGGTCCGTTTCAGCGGGGACAGAGCGAAAACGTTTgcgctaaaaaaataaaaaaaggacattgAAGCACATTTGAAAGCAGAGGGTACCCGTTCTGTCTCCAGCGAAAACgtacatttatctgaaataactGCGTATAAAAGTTtgtgtataataaatgtttaaatgtgtctGTATCGGTGCATGTTTGTGGCATGTGGTCAATAAATTCATTATGTTGTAATAA

Function

symbol description
hoxd10a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in mesenchyme; mesenchyme pectoral fin; pectoral fin bud; and pectoral fin field. Human ortholog(s) of this gene implicated in congenital vertical talus. Orthologous to human HOXD10 (homeobox D10).
hoxd10 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including limb morphogenesis; neuron differentiation; and regionalization. Located in cytoplasmic ribonucleoprotein granule; cytosol; and nucleoplasm. Implicated in congenital vertical talus.

NR:

description
homeobox protein Hox-D10

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09295 HOXD10; homrobox protein Hox-D10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248345.1 True 2224 mRNA 0.49 2 4394716 4397578

Neighbor

gene id symbol gene type direction distance location
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding upstream 2705 4389648 ~ 4392011 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding upstream 7713 4385439 ~ 4387003 (+)
hoxd13a NA coding upstream 11831 4381524 ~ 4382885 (+)
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding upstream 282491 4109650 ~ 4112225 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 413505 3948018 ~ 3981211 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 1145 4398723 ~ 4401072 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding downstream 19710 4417288 ~ 4423340 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding downstream 149923 4547501 ~ 4555749 (+)
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding downstream 178604 4576182 ~ 4610978 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding downstream 305108 4702686 ~ 4706137 (+)
G67684 NA non-coding upstream 37903 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 186175 4207690 ~ 4208541 (+)
G67641 NA non-coding upstream 229644 4162356 ~ 4165072 (+)
G67637 NA non-coding upstream 236753 4156656 ~ 4157963 (+)
G67606 NA non-coding upstream 329755 4064637 ~ 4064961 (+)
LOC122351246 NA non-coding downstream 174996 4572574 ~ 4575525 (+)
G67752 LOC107600734,LOC107683095 non-coding downstream 279872 4677450 ~ 4685181 (+)
G67769 NA non-coding downstream 380779 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 425848 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 472607 4870185 ~ 4870882 (+)
G67630 NA other upstream 172545 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 267703 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 408754 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 411134 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 471838 3913638 ~ 3922878 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 12317 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 125708 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 311475 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 617892 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 627985 5025563 ~ 5028639 (+)

Expression


Co-expression Network