si:ch211-222f23.6 (LOC107657380,LOC107716910,LOC107571834)


Basic Information

Item Value
gene id si:ch211-222f23.6
gene name LOC107657380,LOC107716910,LOC107571834
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4702686 ~ 4706137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248346.1
CGGAGCATCAAGCCTTTTCCAGGGGGGAGAAACCACAGAACAGGCTTCCGACCCAGAAGCGGGAGGTAGTTCTGGTGGTTGTGGAAGAATGTAGGGATTCGCCGGTCTCCATTCCAGTGCAGCTGTTACTTAGCCACGGCTGAAGGACCATCTCTGCCAGGAAACCCAGTGAAGAATTTTCTGGAACTTTGGACTTTGCCTTACGTTGGATAAACTACACCAAACAAAACTCGCAGCAAAGAGGGAACTGGAACACAAAGAGCTGAATGACGGAAAGGGCATCCTGATGAGGAACAGCTGCGATCGTTGTTTCCCCTCTTTTTATTGTGAGCACACAGACACGTGTATGTGCTGTTGTGCAACTTGATTCAATTACAGATATcaaatggcattttaatatgGGTTTTTAGTTCTCGGTTTTCGTTATGCAACAGTCCACggatttttaaaaaggtctAATGTGATGCAGTAAGTAAGAGCTGGCTCACACTGACCACACAGAGTAAAGAGATTGGCATGAGTTGGGTTATTATCAGCTTTGGACAACATGCATCGTCTGCTTTGGAGAACAAATGTTGACTTATTCTTCTGTCTGCTTTTGATTCATCTCAAATGCAACAACATAATAGGTGGAGGTCTGAGGATTATTGACCACGATGAGTCAGTCAAAAAAGGAGGAAATATCACTTTGTTTTGTCGTCTGATTGAGACAGAGGAGGATTTAACTCGCATTGTCTGGCAGAAACAGACAAGAGAAAACCTTGAACAGGAAACATTCTTAATTGTTGAAAAAGATGGTAAAACTGAACACAAAAGTGATTTACTGGACAAGGTCAAATTTATTGGGaatattaaagagaaaaatggaTCGGTTCAGCTGCTGGGAATGACACTGCTCGATGATGGGGTGTATACTTGTATCTTCATATTTCCTAGtggacaaaaacagacaaacatcaATGTCACCGTGCATGTTCCTCCGGTGGTGAACGTTGCCGGGAAGACGCATGTTTCAGGTCACGTCGACATTGTTTTGGCATCATGCGTTGCTTCCAACGGCAGGCctgcagcagaagtgttttggaGATTAGGATCCGAGAGTCATTTGGGAAGGACAGAAACCAGCTACACCGAGCACACGGATGGGAGAGTCACGGTCGTGTCCCACGTACTCGGTGCTCCAACCAAAGATTTAAACCAGAAGAAGATCAAGTGTGTGGTAAACCACAGCACACTGACGAAGGAGCTAGAGTTGGACTACATAATAAACGTCCACTATCCTCCAGAATTGGTGGTGATCTCTCCTGAGGATCCAGCACAGACTCAAGAATATCTTTGTTCGGTGGATTGTAACCCAACACCAACCAGCTACACGTGGACCAGATTGAACGGAAGTACTCCCGTTCTGAAGGAAACAAGCTTTTCATCCCAAAATCGTCTTCTGGTTTTAATGGTGTATACATCTGTACAGCATCAAACCAGTATGGAAGTGCTTCAGGGGTCCTTTATGTGAATAACACCGGATCCACTGCTGACTGTTGGCTTCTTCTCGGCTCGGTCTTCAGCTGTGCCGTCCTGTGTATCCCTCTGCTTTACATATTTAGCGGgggtaaaaaaagtaaaagtacagttaaagtaaacatttaatttcgTCCTGATTAGCTGATCATGTAGAAAAATGTGATTAGATTAAGACAATAGATTAAGTAAACAGGAAATCATGCAGGGTCATCAAACCATCTGTaggtgtcaccaagccagcagagggagccctgacctctgagtgatctgcattcactccctctgcgacaacttcctgtctgaggactataaattcagtagcaggcccctcacctgcaggttgcattgt

Function

NR:

description
PREDICTED: nectin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248346.1 True 1870 mRNA 0.45 7 4702686 4706137

Neighbor

gene id symbol gene type direction distance location
agps agps,LOC107725825,LOC107657345,LOC107671268,LOC107716908 coding upstream 91708 4576182 ~ 4610978 (+)
hnrnpa3 hnrnpa3,LOC107657386,LOC107600707 coding upstream 146937 4547501 ~ 4555749 (+)
hoxd3a hoxd3a,hoxd3,LOC107716912,LOC107600705,LOC107657387,LOC107725818,LOC107671318,LOC107588224 coding upstream 279346 4417288 ~ 4423340 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding upstream 301614 4398723 ~ 4401072 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding upstream 305108 4394716 ~ 4397578 (+)
osbpl6 osbpl6,LOC107670309 coding downstream 14418 4720555 ~ 4772214 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding downstream 119241 4825378 ~ 4829866 (+)
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding downstream 134801 4840938 ~ 4853139 (+)
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding downstream 286176 4992313 ~ 5006796 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding downstream 352426 5058563 ~ 5059629 (+)
G67752 LOC107600734,LOC107683095 non-coding upstream 17505 4677450 ~ 4685181 (+)
LOC122351246 NA non-coding upstream 127161 4572574 ~ 4575525 (+)
G67680 NA non-coding upstream 298476 4351701 ~ 4404210 (+)
G67684 NA non-coding upstream 345873 4355005 ~ 4356813 (+)
G67657 NA non-coding upstream 494145 4207690 ~ 4208541 (+)
G67769 NA non-coding downstream 72220 4778357 ~ 4780535 (+)
G67782 NA non-coding downstream 117289 4823426 ~ 4823776 (+)
G67812 NA non-coding downstream 164048 4870185 ~ 4870882 (+)
G67826 NA non-coding downstream 193348 4899485 ~ 4954081 (+)
G67865 NA non-coding downstream 293791 4999928 ~ 5011204 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 140084 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 289526 4409895 ~ 4413160 (+)
G67630 NA other upstream 480515 4141054 ~ 4222171 (+)
scrn3 scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698 other upstream 575673 4120527 ~ 4127013 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 716724 3981346 ~ 3985962 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 2916 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 309333 5015470 ~ 5018338 (+)
LOC122351471 NA other downstream 319426 5025563 ~ 5028639 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 434008 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 699092 5405229 ~ 5405301 (+)

Expression


Co-expression Network